| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,282,737 | T→G | 5.8% | intergenic (‑129/+100) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,282,737 | 0 | T | G | 5.8% | 298.2 / 7.2 | 101 | intergenic (‑129/+100) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (46/49); new base G (3/3); total (49/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.41e-01 | |||||||||||
Only 100 of 102 total aligned reads displayed.
TGGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGT > NC_002947/2282590‑2282885 | tggGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑Tg > 2:75519/1‑149 (MQ=255) ggggggATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCa < 1:75519/149‑1 (MQ=255) gAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCt < 4:302408/149‑1 (MQ=255) aaCCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGTCCTCTTCGC‑TGGCACGCCCGCTc > 8:270305/1‑148 (MQ=255) cATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCca > 7:275562/1‑148 (MQ=255) cATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCca > 1:374481/1‑148 (MQ=255) aagATTGGTGCTCGTCATCAGGTCTGCATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCcaca < 8:334636/147‑1 (MQ=255) aTGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCca > 3:273085/1‑147 (MQ=255) gATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGc < 5:125421/132‑1 (MQ=255) gATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGc > 6:125421/1‑132 (MQ=255) aTTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTc < 3:131190/149‑1 (MQ=255) aTTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCAAAGt > 5:1743/1‑148 (MQ=255) tCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCCCTTCGC‑GGGCACGCCCGCTCCCACAGTCCAACt > 1:23567/1‑149 (MQ=255) gTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCAGCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGca < 2:198803/147‑1 (MQ=255) aGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCtt < 8:275562/148‑1 (MQ=255) aGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTg < 2:291385/149‑1 (MQ=255) ggTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTgg < 7:270305/149‑1 (MQ=255) gTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCCCGCCCGCTCCCACAGTCCAACTGCACGGTCGTgg > 5:267212/1‑148 (MQ=255) gTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTgg > 5:267216/1‑148 (MQ=255) gTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTgg > 7:170030/1‑148 (MQ=255) gTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTATTgg > 4:185926/1‑148 (MQ=255) tCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTgg > 2:45329/1‑147 (MQ=255) aTGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCt < 2:374481/148‑1 (MQ=255) cgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCgaaggggcaggagcagccgacatcagttacacgg > 8:150194‑M1/1‑111 (MQ=255) cgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCa < 4:316482/149‑1 (MQ=255) gcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACtgtg > 7:81472/1‑146 (MQ=255) ctctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCCCTTCGC‑GGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGt < 2:23567/149‑1 (MQ=25) ttGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGtt < 3:189088/147‑1 (MQ=255) gCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGcaca > 2:217991/1‑124 (MQ=255) gCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGcaca < 1:217991/124‑1 (MQ=255) gCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGTTGGa > 7:60593/1‑148 (MQ=255) gCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGTTGGa < 8:60593/148‑1 (MQ=255) tGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCgaaggggccggagcaggcgacatcagttaccggg < 2:78921‑M1/136‑35 (MQ=255) tGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCgaaggggccggagcaggcgacatcagttaccggg > 1:78921‑M1/1‑102 (MQ=255) gcgcTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACtgtg < 3:112542/149‑1 (MQ=255) tCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGTGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCCCTTCGC‑GGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGtt < 7:74654/137‑1 (MQ=21) tCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGTGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCCCTTCGC‑GGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGtt > 8:74654/1‑137 (MQ=21) ggAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAg > 7:238918/1‑114 (MQ=255) ggAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAg < 8:238918/114‑1 (MQ=255) gAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACtgtg > 7:297383/1‑141 (MQ=255) gAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACtgtg < 8:297383/141‑1 (MQ=255) ttttAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCcaca < 4:272888/93‑1 (MQ=255) ttttAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCcaca > 3:272888/1‑93 (MQ=255) ttttAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACtgtg < 2:172786/135‑1 (MQ=255) ttttAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACtgtg > 1:172786/1‑135 (MQ=255) ggCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAg > 2:98755/1‑149 (MQ=255) gCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAAATGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAgg > 7:17475/1‑149 (MQ=255) tACCGGAAACATATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑Tg < 4:5052/66‑1 (MQ=255) tACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCa < 4:171754/114‑1 (MQ=25) tACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCa > 3:171754/1‑114 (MQ=25) tACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACAACAAAGTCATGGAAGCCAGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAtggg > 8:54747/1‑149 (MQ=37) tACCGGAAACAGATCTTTGCGCAAGGTCTTTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑Tg > 3:5052/1‑66 (MQ=255) aCCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGc > 4:84354/1‑133 (MQ=255) aCCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGc < 3:84354/133‑1 (MQ=255) cGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGGGCAGGTGGGGTGTGGGGG‑CGGGGGGGCCcgggcag > 8:360639/1‑138 (MQ=37) cGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTCCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCCCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAg < 7:360639/143‑1 (MQ=255) gAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACtgtg > 6:374643/1‑120 (MQ=255) gAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACtgtg < 5:374643/120‑1 (MQ=255) gAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAgg < 7:340458/142‑1 (MQ=255) gAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCGGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAgg > 8:340458/1‑142 (MQ=255) aaaCAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAg > 3:92228/1‑149 (MQ=255) cAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCGCAGTCTTGGAAGCCtgt > 3:69373/1‑102 (MQ=255) cAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAg < 6:267216/149‑1 (MQ=255) aGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTg > 3:65651/1‑92 (MQ=255) aGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTg < 4:65651/92‑1 (MQ=255) ttCTTTGCGCCTGGTCTGTTAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACCGTCCACCTGCACTGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCTTGCCCGCGAAGGGGCCGGAGCAgg < 8:17475/146‑1 (MQ=25) atgtttGCGCGAGGTCTTTTAAAATTGTTTGGCCACCCACCGGCCGCTTCGC‑TGGCACGCCCGCTCCCCCCGTCCAACTTCACAGTCTTGGATGCCTTTTCAGTGGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAgg < 8:170030/144‑1 (MQ=18) tttGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTg < 1:217120/122‑1 (MQ=255) tttGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTg > 2:217120/1‑122 (MQ=255) gcgcCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATc < 4:92228/148‑1 (MQ=255) gcCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGa < 8:12082/124‑1 (MQ=255) gcCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGa > 7:12082/1‑124 (MQ=255) tgtgAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCATGGCACGCCCGCGCCCACAGTCCAACTGCACAGGGTTGGaa > 1:60983/1‑78 (MQ=25) tgtgAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGaa < 2:60983/77‑1 (MQ=255) tgAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGGGCAGTTGGACGGGGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCCGGCGCCATGAGGTACCggg > 7:328675/1‑146 (MQ=25) tcaaaaaTCGGTCGCCAGCCACCGGCCTCTCCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTGGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCggg < 3:74528/144‑1 (MQ=25) gAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACCGTCCAACTGCACAGGCTTGGGAGCCTGGGCTGTTGGACTGTGGGCG‑CGGGCGTGCCCGCGCTGGGGCCGGAGCAGGCGAGCTCAGTTACCGGGCAgc > 5:128599/1‑148 (MQ=25) aaaaTGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCgaaggggccggagcaggcgacatcagttaccgggcagatagggccagtcatcacccaccagaaacacccgttctgcctcctgccaggcaccatcggcatcaggcac < 7:150194‑M1/149‑107 (MQ=255) aaTGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCCGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAg < 1:98755/149‑1 (MQ=255) tgtcTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGACCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGc < 6:1743/149‑1 (MQ=255) gtTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAg > 2:270978/1‑149 (MQ=255) gccagccaCCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGtca > 2:236613/1‑149 (MQ=255) cagccaCCGGCCTCTTCGC‑TGGCACGCCGGCTCCCACAGTCCAACTGCACTGTCTTGGAAGGCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGTTAgg < 7:225476/139‑1 (MQ=255) cagccaCCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGtt < 3:224575/72‑1 (MQ=255) cagccaCCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGtt > 4:224575/1‑72 (MQ=255) cagccaCCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGGAGGCGACATCAGTTACCGGGCAGATAGGGCCAGtcat > 6:307494/1‑148 (MQ=255) cagccaCCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACACTCCAACTGCACAGTCTAGGAAGCCTGTGCAGATGGACAGTGGGAG‑CGGGCGTGCCCCCGAAGGGGCCGGACCAGGCGACATCACTTACCGGGCAGGTAgg > 8:225476/1‑139 (MQ=255) agccaCCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGGCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGtcatca < 1:270978/149‑1 (MQ=255) agccaCCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGTCATCAGTTACCGGGCAGATAGGGCCAGtcatca < 1:236613/149‑1 (MQ=255) ccGGCCCCTTCGC‑GGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCtgtg < 6:321629/61‑1 (MQ=255) ccGGCCCCTTCGC‑GGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCtgtg > 5:321629/1‑61 (MQ=255) ggCCTATTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGTAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACccacca < 7:54747/149‑1 (MQ=255) ccTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGACGCCTGGGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGCCAGATAGGGCCAGTCATCACCCACCAGa < 1:212949/149‑1 (MQ=255) ccctTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAg < 1:305838/57‑1 (MQ=255) ccctTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAg > 2:305838/3‑59 (MQ=255) tctTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGaaa > 6:307598/1‑149 (MQ=255) ttCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGaaa < 3:185926/147‑1 (MQ=255) c‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCGTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGc > 5:357502/1‑123 (MQ=255) c‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGc < 6:357502/123‑1 (MQ=255) tGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGt > 5:152281/1‑149 (MQ=255) | TGGGGGGGGATGAAACCATGATTGGTCCTCGTCATCAGGTCTGAATGGCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGC‑TGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAG‑CGGGCGTGCCCGCGAAGGGGCCGGAGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGT > NC_002947/2282590‑2282885 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |