Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,408,660 | C→G | 8.6% | intergenic (‑96/+46) | PP_2111 ← / ← acnA‑I | aerotaxis receptor/aconitate hydratase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,408,660 | 0 | C | G | 8.6% | 167.1 / 6.0 | 58 | intergenic (‑96/+46) | PP_2111/acnA‑I | aerotaxis receptor/aconitate hydratase |
Reads supporting (aligned to +/- strand): ref base C (29/23); new base G (2/3); total (32/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.51e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.33e-01 |
GGAAAGTCCGTTCTCTCTGGGTAATCGGCTGGTTGTTACGCATGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGTTCAGGGTATCAATCCGGCATAGCACCTCGATCTG > NC_002947/2408522‑2408807 | ggAAAGTCCGTTCTCTCTGGGTAATCGGCTGGTTGTTACGCATGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGgcgc > 4:365131/1‑149 (MQ=255) gTCCGTTCTCTCTGGGTAATCGGCTGGTTGTTACGCATGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCGGGGGCGGCGCTCgat < 1:76063/149‑3 (MQ=255) cGTTCTCTCTGGGTAATCGGCTGGTTGTTACGCATGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGttt > 1:276260/1‑148 (MQ=255) tGGGTAATCGGCTGGTTGTTACGCATGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCACCCGCGGCGCTCGGTTTCAAgaacgg > 5:173105/1‑148 (MQ=255) ggTAATCGGCTGGTTGTTACGCATGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAgaacggaa < 2:276260/148‑1 (MQ=255) tCGGCTGGTTGTTACGCATGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATc > 7:229018/1‑149 (MQ=255) tGGTTGTTACGCATGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCgg < 8:229018/149‑1 (MQ=255) gttgttACGCATGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGcc < 3:365131/149‑1 (MQ=255) gttACGCATGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGACCGAATCTTCGGCCAgc > 4:204143/1‑148 (MQ=255) gCATGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCaa > 6:157254/1‑149 (MQ=255) aTGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACt > 7:346348/1‑149 (MQ=255) aTGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAAAGGATATTTGATACATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACt > 7:316420/1‑149 (MQ=255) tGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGa < 3:352148/149‑1 (MQ=255) tCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCt > 8:211024/1‑149 (MQ=255) cGCACGGCTTTCGACAGGTATCGGCTAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTg < 8:316420/148‑1 (MQ=255) gCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGgc > 4:284108/1‑149 (MQ=255) cAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGgcg < 8:346348/149‑1 (MQ=255) gCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCaa > 5:47901/1‑148 (MQ=255) tCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGgc > 2:356387/1‑140 (MQ=255) tCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGgc < 1:356387/140‑1 (MQ=255) gACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATaa < 3:366512/149‑1 (MQ=255) gACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATaa > 4:366512/1‑149 (MQ=255) cAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAAt > 3:304818/1‑148 (MQ=255) ggTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGTAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCa < 8:17465/149‑1 (MQ=255) ggTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCa < 5:157254/149‑1 (MQ=255) tCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGaa < 6:47901/148‑1 (MQ=255) cTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCg > 2:218041/1‑146 (MQ=255) cTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCg < 1:218041/146‑1 (MQ=255) ttttATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGaa < 3:95143/149‑1 (MQ=255) ttttATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGaa < 3:284108/149‑1 (MQ=255) ttGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCaa > 1:150845/1‑94 (MQ=255) ttGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCaa < 2:150845/94‑1 (MQ=255) tGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTCGCGCAACACATAATGCAGCATCCCCCCCGCCATGAAGTATTc > 8:330592/1‑149 (MQ=255) gAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTc < 6:173105/148‑1 (MQ=255) aaTGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCg > 5:113895/1‑80 (MQ=255) aaTGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCg < 6:113895/80‑1 (MQ=255) aaTGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCa > 1:64150/1‑149 (MQ=255) gATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTc > 8:10477/1‑149 (MQ=255) atTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGtt > 8:83799/1‑149 (MQ=255) ttGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCAcc < 8:320147/142‑1 (MQ=255) ttGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCAcc > 7:320147/1‑142 (MQ=255) gATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGTTCAgg > 1:27877/1‑149 (MQ=255) gATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTCAAGTATTCCACCTCGTTCAgg > 8:60052/1‑149 (MQ=255) aTTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATc < 6:163800/115‑1 (MQ=255) aTTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATc > 5:163800/1‑115 (MQ=255) aTTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGTTCAggg > 5:118585/1‑149 (MQ=255) attgattgCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAg < 7:223925/126‑1 (MQ=255) attgattgCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAg > 8:223925/1‑126 (MQ=255) attgattgCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAAT‑CCCCCCGCCTTGAAGTATTCCACCTCGTTCAGGGt > 2:180159/1‑145 (MQ=255) attgattgCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAAT‑CCCCCCGCCTTGAAGTATTCCACCTCGTTCAGGGt < 1:180159/145‑1 (MQ=255) aaccGAGCGCCGCGGGGGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAAt < 4:226769/88‑1 (MQ=38) aaccGAGCGCCGCGGGGGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAAt > 3:226769/4‑91 (MQ=38) tCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGTTCAGGGTATCAATCCGGCATAGCa > 4:176434/1‑149 (MQ=255) cGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGTTCAGGGTATCAATCCGGCATAGCAc > 2:208679/1‑149 (MQ=255) gAGCGCCGCGGGGGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGTTCAgg < 7:362335/128‑1 (MQ=255) gAGCGCCGCGGGGGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGTTCAgg > 8:362335/1‑128 (MQ=255) gAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGTTCAGGGTATCAATCCGGCATAGCAc < 3:176434/148‑1 (MQ=255) cgccgcCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGTTCAGGGTATCAATCCGGCATAGCACCTCg < 7:330592/149‑1 (MQ=255) gccgccCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGTTCAGGGTATCAATCCGGCATAGCACCTCGa < 2:27877/149‑1 (MQ=255) ccgccCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGCTCATCTGGGGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGGTCCGGGTATCAATCCGGCATAGGACCTCGAt > 7:360926/1‑149 (MQ=255) cccccGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGTTCAGGGTATCAATCCGGCATAGCACCTCGATCTg < 7:211024/149‑1 (MQ=255) cccccGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGTTCAGGGTATCAATCCGGCATAGCACCTCGATCTg < 1:208679/149‑1 (MQ=255) | GGAAAGTCCGTTCTCTCTGGGTAATCGGCTGGTTGTTACGCATGGGTGATAGTCCGCAGGGCTTTCGACAGGTATCGGCAAGCGGCTGGTTTTATTGAATGGATATTTGATTCATTGATTGCAGAGATCGAGCGCCGCCCCCGCGGCGCTCGGTTTCAAGAACGGAACGAATCTTCGGCCAGACTCAACTGGCGATCATCTGGCGCAACACATAATGCAGAATCCCCCCCGCCTTGAAGTATTCCACCTCGTTCAGGGTATCAATCCGGCATAGCACCTCGATCTG > NC_002947/2408522‑2408807 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |