Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,724,005 | G→A | 6.9% | S196L (TCG→TTG) | azlC ← | branched‑chain amino acid transport protein AzlC |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,724,005 | 0 | G | A | 6.9% | 170.6 / 2.5 | 58 | S196L (TCG→TTG) | azlC | branched‑chain amino acid transport protein AzlC |
Reads supporting (aligned to +/- strand): ref base G (30/24); new base A (2/2); total (32/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 |
AGAAACACGATGGCGCCCATGGCGAAAATCAGGATCCAGGTCATGCGCGGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAGGTGTGGAATGTTCTGGCCCAGCAGTATGCCGGC > NC_002947/2723859‑2724150 | agaAACACGATGGCGCCCATGGCGAAAATCAGGATCCAGGTCATGCGCGGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCgaa < 6:294951/149‑1 (MQ=255) cacGATGGCGCCCATGGCGAAAATCAGGATCCAGGTCATGCGCGGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCgaacagaa < 5:70869/149‑1 (MQ=255) gATGGCGGCGATGGCGAAAATCAGGATCCAGGTCATGCGCGGGCTCCGGCGAATTTCTGGCTGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCATGGCGGTTTCCCAGTGCCAGTAGCTTAACAGCACCGaacagaacag < 3:363822/149‑1 (MQ=255) gATGGCGCCCATGGCGAAAATCAGGATCCAGGTCATGCGCGGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGaacagaacag > 5:199912/1‑149 (MQ=255) ggCGAAAATCAGGATCCAGGTCATGCGCGGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTAc > 1:6407/1‑149 (MQ=255) tcGAAAATCAGGATCCAGTTCATGCGCGGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCTCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACg < 7:4168/148‑1 (MQ=255) gCGAAAATCAGGATCCAGGTCATGCGCGGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACg < 8:57241/149‑1 (MQ=255) gCGAAAATCAGGATCCAGGTCATGCGCGGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACg > 6:53803/1‑149 (MQ=255) gCGAAAATCAGGATCCAGGTCATGCGCGGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCAAACAGAACAGCGACACGGCTACg > 4:194741/1‑149 (MQ=255) aaaaTCAGGATCCAGGTCATGCGCGGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGcac < 5:53803/149‑1 (MQ=255) cATGCGCGGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGCACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGtt > 3:34451/1‑149 (MQ=255) aTGCGCGGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑g > 5:343734/1‑149 (MQ=255) cgcgGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑gcg < 2:6407/148‑1 (MQ=255) cGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCt > 2:332711/1‑113 (MQ=255) cGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCt < 1:332711/113‑1 (MQ=255) cGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAgggg < 6:357422/148‑1 (MQ=255) cGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAggg < 4:34451/147‑1 (MQ=255) ggCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGc < 8:187971/116‑1 (MQ=255) ggCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGc > 7:187971/1‑116 (MQ=255) ggCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGgcg < 6:199912/149‑1 (MQ=255) gCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACg > 4:257530/1‑114 (MQ=255) gCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACg < 3:257530/114‑1 (MQ=255) aTTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGAt > 5:99096/1‑148 (MQ=255) tCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAgg > 2:240985/1‑149 (MQ=255) tGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGc > 2:181083/1‑149 (MQ=255) gCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGc < 6:343734/147‑1 (MQ=255) aTGAACCCGGCGCTCATGCCCAGTAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACaa > 7:304229/1‑148 (MQ=255) ccGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGc > 3:190163/1‑149 (MQ=255) ccGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCAAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGc < 3:194741/149‑1 (MQ=255) tCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATg > 1:288203/1‑149 (MQ=255) cATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGTCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATg > 8:302853/1‑148 (MQ=255) gCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGgc > 7:294486/1‑115 (MQ=255) gCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGgc < 8:294486/115‑1 (MQ=255) cccAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGaa < 8:82527/149‑1 (MQ=255) gcagGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGc > 3:93079/1‑133 (MQ=255) gcagGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGc < 4:93079/133‑1 (MQ=255) gCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGc > 8:286052/1‑117 (MQ=255) gCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGc < 7:286052/117‑1 (MQ=255) gACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCAAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACt > 3:34727/1‑149 (MQ=255) accaccAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTg > 7:276249/1‑149 (MQ=255) caccaGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGt > 6:211545/1‑149 (MQ=255) ccaGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGga > 6:228941/1‑127 (MQ=255) ccaGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGga < 5:228941/127‑1 (MQ=255) gggCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAgg < 6:99096/149‑1 (MQ=255) ggCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAGgt < 4:190163/149‑1 (MQ=255) ggTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAGGtgtg < 1:240985/149‑1 (MQ=255) tttCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGgcgc < 5:369528/88‑1 (MQ=255) ccAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCACGGGCGCGATCAGTGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGCTCCAGGTGTGGAAtct > 6:253009/1‑147 (MQ=255) aGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGTTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCATACCGAAc < 7:249620/128‑1 (MQ=255) aGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAAc > 8:249620/1‑128 (MQ=255) aGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAGGTGTGGAATGTTc > 5:253120/1‑149 (MQ=255) gTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAg < 2:91647/129‑1 (MQ=255) gTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAg > 1:91647/1‑129 (MQ=255) gTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAGGTGTGGAATGTTCTGGCCca < 2:288203/149‑1 (MQ=255) gCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAGGTGTGGAATGTTCTGGCCcag > 5:125768/1‑147 (MQ=255) cTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAGGTGTGGAATGTTCTGGCCcagcag > 5:318261/1‑149 (MQ=255) tGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAGGTGTGGAATGTTCTGGCCcagcag > 8:271937/1‑148 (MQ=255) cACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTTGGCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAGGTGTGGAATGTTCTGGCCCAGCAGTATGCCg > 1:280213/1‑149 (MQ=255) aCCAAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAGGTGTGGAATGTTCTGGCCCAGCAGTATGCCGGc < 4:34727/149‑1 (MQ=255) cGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAGGTGTGGAATGTTCTGGCCCAGCAGTATGCCGGc > 8:29334/1‑147 (MQ=255) | AGAAACACGATGGCGCCCATGGCGAAAATCAGGATCCAGGTCATGCGCGGGCTCCGGCGAATTTCTGGCAGATGAACCCGGCGCTCATGCCCAGCAGGCCTGCGACCACCAGGGCGGTTTCCCAGTGCCAGTAGCTGAACAGCACCGAACAGAACAGCGACACGGCTACGCACACCACGGTGGCCAGGTT‑GCGCACCAGGGGCGCGATCAGGGCGACAAAAGTGGCGACAATGGAGAAATCCAGACCGAACTGGTCCAGGTGTGGAATGTTCTGGCCCAGCAGTATGCCGGC > NC_002947/2723859‑2724150 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |