| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 262,944 | C→G | 6.9% | intergenic (+179/‑306) | PP_0211 → / → gabD‑I | hypothetical protein/succinate‑semialdehyde dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 262,944 | 0 | C | G | 6.9% | 185.2 / 3.8 | 58 | intergenic (+179/‑306) | PP_0211/gabD‑I | hypothetical protein/succinate‑semialdehyde dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (27/27); new base G (2/2); total (29/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 | |||||||||||
AGAAGCAGGACGACCGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCAAGCCAGCTCCCA > NC_002947/262797‑263082 | acaaGCAGGTCGACCGCCTAGCCATCGATCTGGCCGATGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGTGTACAGGTCGCAACTGGGCAATGTGCCACCGATTACGATGCCGATGAAAACTGCTTCATCGTTTGAGGACGtcatca < 2:265837/147‑1 (MQ=255) aaGCATGACGAGCGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGTGTACAGGGCGCAACTGGGCATCGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAgg < 1:349418/149‑1 (MQ=255) gacgacCGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTgc > 4:272129/1‑149 (MQ=255) gacCGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTgctga < 8:299598/149‑1 (MQ=255) gCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGCCCTGATGCCGTgctg < 6:154984/144‑1 (MQ=255) gCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGCCCTGATGCCGTgctg > 5:154984/1‑144 (MQ=255) aGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACCCCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGCTGACAACAGCATCATCGTTTCCGCACGGCATCAGGGCGTGCTGCGCTGCTc > 3:238538/1‑148 (MQ=255) aGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATc > 1:62361/1‑148 (MQ=255) aGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATc > 4:44698/1‑148 (MQ=255) aaCGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCt > 7:27445/1‑149 (MQ=255) aaCGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTCCAGCACGCCCTGATGCCGTgctgaaa < 6:324011/139‑3 (MQ=255) aaCGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTCCAGCACGCCCTGATGCCGTgctgaaa > 5:324011/1‑137 (MQ=255) aaCTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGc > 1:377289/1‑148 (MQ=255) aGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTc < 2:62361/149‑1 (MQ=255) ccTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAgg < 4:99113/108‑1 (MQ=255) ccTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAgg > 3:99113/1‑108 (MQ=255) cTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTc < 5:165510/141‑1 (MQ=255) cTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTc > 6:165510/1‑141 (MQ=255) ctctTTGGCGACACCCCTACTGTGGTTACAGGGCGCAACTGGGCAACGGGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCATCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATc < 8:358805/147‑1 (MQ=255) ctctTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATc < 1:18456/147‑1 (MQ=255) tttGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGc < 2:133950/103‑1 (MQ=255) ggCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCg < 3:44698/148‑1 (MQ=255) ggCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCg < 8:27445/148‑1 (MQ=255) cccGAGTGAGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCAAAGGCGATCTCATACATCCCCTCCGGGAGGGCCg > 8:173045/1‑149 (MQ=255) gtgGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTcc < 3:272129/149‑1 (MQ=255) ttACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGCTGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGATGGCCGTCGGTcccccc < 7:38571/148‑1 (MQ=255) tACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCt > 4:96411/1‑149 (MQ=255) aGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTca > 4:159102/1‑149 (MQ=255) ggCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGcc < 1:372621/98‑1 (MQ=255) ggCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGcc > 2:372621/1‑98 (MQ=255) cTGGGCAACGTGCCAGCGTTTACGTTGCCGTTGACAACAGCATCATCGTTTCAGCTCGGAATCTGTGGGTGCTGAGCTGATAGACCTCGCCATGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACAtttcttt < 7:173045/149‑1 (MQ=255) cTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACAtttcttt < 4:343501/149‑1 (MQ=255) cTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACAtttcttt > 4:229348/1‑149 (MQ=255) ggCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACAtttctttc < 2:256273/147‑1 (MQ=255) cAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGtt < 7:23093/149‑1 (MQ=255) cAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGtt < 7:28656/149‑1 (MQ=255) tGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTc < 2:377289/149‑1 (MQ=255) ccACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCg > 6:47973/1‑148 (MQ=255) cACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGt > 5:176434/1‑148 (MQ=255) cACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTc > 2:53438/1‑149 (MQ=255) cACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTc > 7:15704/1‑149 (MQ=255) cACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTc > 1:36056/1‑149 (MQ=255) gATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTc < 4:210721/145‑1 (MQ=255) gATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTc > 3:210721/1‑145 (MQ=255) gATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAAc < 3:96411/149‑1 (MQ=255) aTTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAAcc > 3:329016/1‑149 (MQ=255) cGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCCCATTTCTTTCAGTTCATTCGTCTAAGCTGTACTGGcc > 4:269610/1‑149 (MQ=255) cGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGcc < 2:36056/149‑1 (MQ=255) cGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGcc > 2:287046/1‑149 (MQ=255) acaacaGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTAt < 4:329016/148‑1 (MQ=255) aacaGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGc < 6:211070/141‑1 (MQ=255) aacaGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGc > 5:211070/1‑141 (MQ=255) aGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTgg < 1:287046/149‑1 (MQ=255) tttCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAAc < 4:304695/118‑1 (MQ=255) tttCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAAc > 3:304695/1‑118 (MQ=255) ttCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCTTCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCAAGCCAGCTc > 3:328989/1‑149 (MQ=255) ttCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCAAGCCAGCTc > 5:128725/1‑149 (MQ=255) cAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCAAGCCAGCTcc < 8:15704/148‑1 (MQ=255) gCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCAAGCCAGCTCCca > 1:248468/1‑148 (MQ=255) | AGAAGCAGGACGACCGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCAAGCCAGCTCCCA > NC_002947/262797‑263082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |