Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,068,339 | A→T | 7.2% | T460S (ACC→TCC) | qedH‑II → | quinoprotein ethanol dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,068,339 | 0 | A | T | 7.2% | 161.4 / 3.6 | 56 | T460S (ACC→TCC) | qedH‑II | quinoprotein ethanol dehydrogenase |
Reads supporting (aligned to +/- strand): ref base A (31/20); new base T (2/2); total (33/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 |
CTGGATGCCGATGGCCTACAACAAGGACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCTGACCACCAAGGGCAACCTGGTGTTCACGGGCACGC > NC_002947/3068212‑3068486 | cTGGATGCCGATGGCCTACAACAAGGACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAg < 4:21954/149‑1 (MQ=255) gATGCCGATGGCCTACAACAAGGACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGa < 4:357110/147‑1 (MQ=255) gATGCCGATGGCCTACAACAAGGACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGAc > 1:142356/1‑148 (MQ=255) tGCCGATGGCCTACAACAAGGACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCAcc > 3:148643/1‑125 (MQ=255) tGCCGATGGCCTACAACAAGGACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCAcc < 4:148643/125‑1 (MQ=255) ccGATGGCCTACAACAAGGACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACa < 2:142356/148‑1 (MQ=255) cGATGGCCTACAACAAGGACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGaa > 1:345562/1‑140 (MQ=255) cGATGGCCTACAACAAGGACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGaa < 2:345562/140‑1 (MQ=255) caacaaGGACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGtgctgc > 7:271661/1‑149 (MQ=255) aacaaGGACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTgcg > 2:32770/1‑149 (MQ=255) ggACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGtgct > 8:110461/1‑141 (MQ=255) ggACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGtgct < 7:110461/141‑1 (MQ=255) gACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCAt < 8:323755/149‑1 (MQ=255) aGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCTCCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑cc < 4:75575/149‑1 (MQ=255) aGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCTCCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑cc > 3:80778/1‑149 (MQ=255) aGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCTCCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑cc > 3:75575/1‑149 (MQ=255) aGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCTCCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑cc < 4:80778/149‑1 (MQ=255) aGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑cc > 8:173156/1‑149 (MQ=255) cTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGt < 7:173156/149‑1 (MQ=255) cGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGc > 1:72482/1‑148 (MQ=255) tGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAg > 3:14124/1‑149 (MQ=255) tCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAgt < 2:72482/149‑1 (MQ=255) aaCGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGc > 3:146402/1‑135 (MQ=255) aaCGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGc < 4:146402/135‑1 (MQ=255) aaCGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGtgtg > 5:162633/1‑149 (MQ=255) ggCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGTCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACaa < 8:271661/149‑1 (MQ=255) cATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGa < 4:14124/149‑1 (MQ=255) aTGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATc < 6:217927/69‑1 (MQ=255) aTGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATc > 5:217927/1‑69 (MQ=255) ggACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCg > 5:137496/1‑115 (MQ=255) ggACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCg < 6:137496/115‑1 (MQ=255) tGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGcgcc > 5:130056/1‑149 (MQ=255) ggAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGcgccg > 4:239809/1‑149 (MQ=255) tcGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCTTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACaa < 8:66902/132‑1 (MQ=255) aCGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACaa > 7:66902/1‑133 (MQ=255) aCGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCtg > 3:14547/1‑149 (MQ=255) gAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCtgtg > 2:113613/1‑149 (MQ=255) aaGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTgg > 5:130921/1‑149 (MQ=255) aaGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTACACCATCAAGCCGACTAAATGAAGACTACATCGCCGTCCTGCGCGCCATCTA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCCCtgtg > 1:298430/1‑149 (MQ=255) gCATCGCCTATAAGAAAGGTGCGGCGTTCCACGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCCGCGGCAAGGAAGAGTGGCGCCACAAGAACTATGCGCCGCtctcgcgc > 5:281994/1‑142 (MQ=255) tataAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCt > 4:208600/1‑149 (MQ=255) taAGAAAGGTGCGTCGATCCTCGGTGCCCGGTTCCCCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGTGGCGGTGTGCTGa < 2:298430/149‑1 (MQ=255) aaGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCTGac > 8:335010/1‑149 (MQ=255) gAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAg < 4:192640/97‑1 (MQ=255) gAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAg > 3:192640/1‑97 (MQ=255) gAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCTGacca < 3:239809/149‑1 (MQ=255) aaGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTAAGCGCCGCTGGGGGGCGGTGTGCTGaccacc < 1:32770/149‑1 (MQ=255) tGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCTGACCACCaa < 1:194521/147‑1 (MQ=255) tGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCTGACCACCaa > 2:194521/1‑147 (MQ=255) ggcgTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCTGACCACCAAGGGc > 5:211710/1‑148 (MQ=255) ccTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCTGACCACCAAGGGCAACCTg < 6:162633/148‑1 (MQ=255) tCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCTGACCACCAAGGGCAACCTGgtg > 8:30140/1‑149 (MQ=255) ggTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCTGACCACCAAGGGCAACCTGGTGtt > 8:332169/1‑149 (MQ=255) tGCCGGCTTCACCATCAAGCCG‑ATCAATGAAGACTAAATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCATAGGCAAGGAAGTTTGGCGCCACAATAACTATGAGCCGCTGTGGGGCGGTGTGCTGACAACCAAGGGCAACCTGGtttta > 2:337167/1‑147 (MQ=255) ggCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGACGCTGTGGGGCGGTGTGCTGACCACCAAGGGCAACCTGGTGTTCACggg > 6:138550/1‑149 (MQ=255) cTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGAGCCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCTGACCACCAAGGGCAACCTGGTGTTCACggg > 1:289359/1‑148 (MQ=255) aCCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCTGACCACCAAGGGCAACCTGGTGTTCACGGGCACGc > 2:92228/1‑148 (MQ=255) aCCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCTGACCACCAAGGGCAACCTGGTGTTCACGGGCACGc > 5:339332/1‑148 (MQ=255) | CTGGATGCCGATGGCCTACAACAAGGACACAGGGCTGTTCTACGTGCCGTCCAACGAGTGGGGCATGGACATCTGGAACGAAGGCATCGCCTATAAGAAAGGTGCGGCGTTCCTCGGTGCCGGCTTCACCATCAAGCCG‑CTCAATGAAGACTACATCGGCGTGCTGCGCGCCATCGA‑CCCGGTCAGCGGCAAGGAAGTGTGGCGCCACAAGAACTATGCGCCGCTGTGGGGCGGTGTGCTGACCACCAAGGGCAACCTGGTGTTCACGGGCACGC > NC_002947/3068212‑3068486 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |