Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,264,008 | T→A | 7.5% | D180V (GAT→GTT) ‡ | PP_2861 ← | methyl‑accepting chemotaxis transducer |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,264,008 | 0 | T | A | 7.5% | 185.3 / 3.2 | 62 | D180V (GAT→GTT) ‡ | PP_2861 | methyl‑accepting chemotaxis transducer |
Reads supporting (aligned to +/- strand): ref base T (29/28); new base A (3/2); total (32/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GATGTTGCCCATCGCCTGCACTGCTTCCTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCGGGCGAGGGCGA > NC_002947/3263860‑3264149 | gATGTTGCCCATCGCCTGCACTGCTTCCTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCAt < 7:258728/149‑1 (MQ=255) tGCCCATCGCCTGCACTGCTTCCTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACg > 6:249860/1‑149 (MQ=255) cccATCGCCTGCACTGCTTCCTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTa < 3:267674/149‑1 (MQ=255) ccATCGCCTGCACTGCTTCCTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTa > 7:28663/1‑148 (MQ=255) aTCGCCTGCACTGCTTCCTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCACCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCGTGTACGTCGATGACGTacag < 1:155610/149‑2 (MQ=255) ccTGCACTGCTTCCTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGccc < 8:90432/149‑1 (MQ=255) gCACTGCTTCCTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGAc < 7:314685/136‑1 (MQ=255) gCACTGCTTCCTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGAc > 8:314685/1‑136 (MQ=255) gCACTGCTTCCTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGaa > 5:234123/1‑149 (MQ=255) cACTGCTTCCTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGACGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAAc < 6:289742/149‑1 (MQ=255) tGCTTCCTGCAGACGGCGCGCTATGCTGCGGGCAATCAGCATCACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCAAACAAGCGAAGAGACGCGAAACTGTCGAGCGAATTCGGCCTGTACGTCAACGACGAACACGACCGAACCg > 4:130891/1‑148 (MQ=255) ccTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGAc > 4:287846/1‑127 (MQ=255) ccTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGAc < 3:287846/127‑1 (MQ=255) gggcgATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGc > 1:295770/1‑149 (MQ=255) gATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTg > 3:141865/1‑148 (MQ=255) aTGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGaa < 4:231021/149‑1 (MQ=255) tgcGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGc < 5:249860/149‑1 (MQ=255) gggCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGa < 2:364644/149‑1 (MQ=255) ggCAATCAGCATGACCACCAGCGCCATCAGCAGGGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTg > 1:45284/1‑148 (MQ=255) ggCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGaa < 4:369125/149‑1 (MQ=255) ggCAATCAGCATGACCACCAGAGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCAAGCCACACGGCTTGAACAGCTGaa > 7:50087/1‑149 (MQ=255) tCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATAc < 3:185376/149‑1 (MQ=255) tCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATAc > 4:175344/1‑149 (MQ=255) tGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCAc < 6:145308/122‑1 (MQ=255) tGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCAc > 5:145308/1‑122 (MQ=255) ccaccaGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTg < 2:45284/149‑1 (MQ=255) caccaGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCGATGACGTacag > 8:44744/1‑92 (MQ=255) caccaGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCGATGACGTacag < 7:44744/93‑2 (MQ=255) ccATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGc > 8:48297/1‑149 (MQ=255) gca‑gGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCAc < 4:143690/104‑1 (MQ=255) gca‑gGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCAc > 3:143690/1‑104 (MQ=255) gca‑gGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTg < 8:28663/149‑1 (MQ=255) a‑gGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTac < 7:41069/75‑1 (MQ=255) a‑gGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTac > 8:41069/1‑75 (MQ=255) gggCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCgat < 7:315728/88‑1 (MQ=255) gggCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCgat < 7:320947/88‑1 (MQ=255) gggCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCgat > 8:315728/1‑88 (MQ=255) gggCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCgat > 8:320947/1‑88 (MQ=255) atctcccACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCgg < 3:282891/145‑1 (MQ=255) aaTGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCgg < 3:130891/149‑1 (MQ=255) aTGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATAc > 6:224156/1‑117 (MQ=255) aTGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATAc < 5:224156/117‑1 (MQ=255) ccACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCgg > 4:282891/1‑144 (MQ=255) cACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTgg < 7:161788/149‑1 (MQ=255) cACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTgg > 7:279810/1‑149 (MQ=255) cGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGc < 4:290388/149‑1 (MQ=255) gCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGc > 1:100921/1‑148 (MQ=255) cAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAg < 6:234123/149‑1 (MQ=255) aaCCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTg < 4:207477/142‑1 (MQ=255) aaCCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTg > 3:207477/1‑142 (MQ=255) aaCCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGc > 4:111924/1‑149 (MQ=255) cAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGa > 7:117934/1‑148 (MQ=255) gcgagcgaATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTc < 7:48297/147‑1 (MQ=255) cgagcgaATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCctg < 3:111924/149‑1 (MQ=255) gagcgaATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGATa < 4:62473/127‑1 (MQ=255) gagcgaATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGATa > 3:62473/1‑127 (MQ=255) gagcgaATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCctgc > 6:42665/1‑149 (MQ=255) cgaATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTgg > 4:118456/1‑149 (MQ=255) aaTTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTggcg < 6:176162/149‑1 (MQ=255) cgtGTACGTCGATGACGTACAGGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCgggcgagg > 7:26097/3‑149 (MQ=255) ccTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCCCGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCgggcgagg > 8:166844/1‑149 (MQ=255) ccTGTACGTCATCGACGTACACGCCCGAACCGATGATCAAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCgggcgagg > 8:171792/1‑149 (MQ=255) tACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCgggcgagggcga > 4:131594/1‑149 (MQ=255) | GATGTTGCCCATCGCCTGCACTGCTTCCTGCAGCGGGCGGGCGATGCTGCGGGCAATCAGCATGACCACCAGCGCCATCAGCA‑GGGCAATGCCCACGCCAACCAGCGAAGCGTCGCGCAACTGGCGAGCGAATTCGGCCTGTACGTCATCGACGTACACGCCCGAACCGATGATCCAGCCCCACGGCTTGAACAGCTGAATATACGAGGTCTTGGCTACCGGCTCACTGGCGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCGGGCGAGGGCGA > NC_002947/3263860‑3264149 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |