| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,419,549 | +C | intergenic (‑38/+98) | PP_1242 ← / ← PP_1244 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,419,548 | 1 | . | C | 90.0% | 26.2 / ‑2.8 | 10 | intergenic (‑37/+99) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (4/5); total (4/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.19e-01 | |||||||||||
GCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAAT > NC_002947/1419413‑1419651 | gacGGGTGCGATTAGTACCAGCGTGGTAGTGTTGTTTTCGCCTTGTTAGAAGCATGTATTGACTACTGTGGTGGGTTATGTTTTGTTGTCGGTTGTCATTGTTTTGTTTCCCTGGATTCTGGGGTGCCTGGGATG‑GCCTCTTCGCggg < 4:108677/146‑1 (MQ=255) aTGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGGGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCCTCTTCGCGGGCACGCCCGc < 5:110928/147‑1 (MQ=255) aGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGGGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCa < 6:102208/148‑1 (MQ=255) ttGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgt > 6:143737/1‑148 (MQ=255) aGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCGGTGGTGACCCtgt > 8:82219/1‑148 (MQ=255) tgtggGTTCTGTTGTGTGGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGcc < 6:26656/146‑1 (MQ=255) ggtggGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGc < 2:48214/146‑1 (MQ=255) ttgtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCCTCTTCGCGGGCACGCCCCCTCCCACAGGTACTGTGCAGTGCGTGGCGGCTGGGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAATAGGcc > 6:140251/1‑148 (MQ=38) gggcctttgttttgttCCCGTGGATGGGGGGTGGCCTGGGGGGCC‑CGCTTCGGGGCCACGCCCGCTCCCACTGGTCCTGGGCCGGGGTTCAGGGTGGGGGGCACCGTGGGGTCGGGGGGGTGCCCGCTAAGAGGCCTGACCTGCTAAt < 4:64113/142‑1 (MQ=255) gggCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTggg > 4:128499/1‑111 (MQ=255) | GCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAAT > NC_002947/1419413‑1419651 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |