| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5953178 = | 25 (0.960) | 3 (0.120) | 3/274 | 3.4 | 10.6% | intergenic (‑222/‑52) | ppk/PP_5218 | polyphosphate kinase/DedA family protein |
| ? | NC_002947 | 5953209 = | 27 (1.100) | intergenic (‑253/‑21) | ppk/PP_5218 | polyphosphate kinase/DedA family protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAAGGAATCCCGCAAGCACCAGAATGGTCTCGCCTTCAAAGAAGGTGCCTAGAAAAAGGGCGAAGTAGCCGAAATCCTGCAGGAATTGTTGAAGCATTTTCTGAGGTGCTGGCGAAATGAACGCGCAGCCTACCCCTTCGCGCGCGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5953326‑5953178‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgttcATTTCGCCAGCACCTCAGAAAATGCTTCAACAATTCCTGCAGGATTTCGGCTACTTCGCCCTTTTTCTAGGCACCTTCTTTGAAGGCGAGACCATTCTGGTGCTTGCGGGATTCCTTGCGTTCCGCGGTTACATGGATATCA > NC_002947/5953209‑5953350 CAAGGAATCCCGCAAGCACCAGAATGGTCTCGCCTTCAAAGAAGGTGCCTAGAAAAAGGGCGAAGTAGCCGAAATCCTGCAGGAATTGTTGAAGCATTTTCTGAGGTGCTGGCGAAATGAACGCGCAGCCGACCCCTTCGCGCGCGTT > 5:25211/1‑148 GAAATGAACGCGCAGCCTACCCCTTCGCGCGCGTTCATTTCGCCAGCACCTCAGAAAATGCTTCAACAATTCCTGCAGGATTTCGGCTACTTCGCCCTTTTTCTAGGCACCTTCTTTGAAGGCGAGACCATTCTGGTGCTTGCGGGAT > 4:43632/1‑148 AATGAACGCGCAGCCTACCCCTTCGCGCGCGTTCATTTCGCCAGCACCTCAGAAAATGCTTCAACAATTCCTGCAGGATTTCGGCTACTTC > 5:111685/1‑91 ATGAACGCGCAGCCTACCCCTTCGCGCGCGTTCATTTCGCCAGCACCTCAGAAAATGCTTCAACAATTCCTGCAGGATTTCGGCTACTTCG < 6:111685/91‑1 GCGTTCATTTCGCCAGCACCTCAGAAAATGCTTCAACAATTCCTGCAGGATTTCGGCTACTTCGCCCTTTTTCTAGGCACCTTCTTTGAAGGCGAGACCATTCTGGTGCTTGCGGGATTCCTTGCGTTCCGCGGTTACATGGATATCA > 7:110179/1‑148 CAAGGAATCCCGCAAGCACCAGAATGGTCTCGCCTTCAAAGAAGGTGCCTAGAAAAAGGGCGAAGTAGCCGAAATCCTGCAGGAATTGTTGAAGCATTTTCTGAGGTGCTGGCGAAATGAACGCGCAGCCTACCCCTTCGCGCGCGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5953326‑5953178‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgttcATTTCGCCAGCACCTCAGAAAATGCTTCAACAATTCCTGCAGGATTTCGGCTACTTCGCCCTTTTTCTAGGCACCTTCTTTGAAGGCGAGACCATTCTGGTGCTTGCGGGATTCCTTGCGTTCCGCGGTTACATGGATATCA > NC_002947/5953209‑5953350 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |