| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3604024 = | 12 (0.460) | 4 (0.160) | 4/280 | 3.0 | 23.8% | coding (630/900 nt) | PP_3179 | LysR family transcriptional regulator |
| ? | NC_002947 | 3604065 = | 14 (0.560) | coding (589/900 nt) | PP_3179 | LysR family transcriptional regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TCGCGCGGGGTTGAGCGGACGAAGGACGCCGGCACCAGGGCCACGCCAAAGCCGCAGGCCACCAGACCCAGCAGGGTGTGGATCTGCGCCGCCTCCTGCACGACCTTGGGGTAGAACCCGGCCGACTCGCACAGCGCAACCAACTGTGCGTGGTAGCCCCCGCCCAGCGCTTGCGGGGTGAACACGAAGTCCTCATCGGCAAACTCGCGCAAGTCGACGGCCTCGAAACGCGCCATGGGATGGCTGGCGGGCAGCGCCATGACGATCTGCTCGTCAAG > NC_002947/3603890‑3604167 | tCGCGCGGGGTTGAGCGGACGAAGGACGCCGGCACCAGGGCCACGCCAAAGCCGCAGGCCACCAGACCCAGCAGGGTGTGGATCTGGGCCGCCTCCTGCACGACCTTGGGGTAGAACCCGGCCGACTCGCACAGCGCAACCAACtgtg < 3:116854/148‑1 (MQ=255) gAAGGACGCCGGCACCAGGGCCACGCCAAAGCCGCAGGCCACCAGACCCAGCAGGGTGTGGATCTGCGCCGCCTCCTGCACGACCTTGGGGTAGAACCCGGCCGACTCGCACAGCGCAACCAACTGTGCGTGGTAGCCCCCGCCCAgc < 5:136648/148‑1 (MQ=255) gAAGGACGCCGGCACCAGGGCCACGCCAAAGCCGCAGGCCACCAGACCCAGCAGGGTGTGGATCTGCGCCGCCTCCTGCACGACCTTGGGGTAGAACCCGGCCGACTCGCACAGCGCAACCAACTGTGCGTGGTAGCCCCCGCCCAgc > 8:53983/1‑148 (MQ=255) ggCACCAGGGCCACGCCAAAGCCGCAGGCCACCAGACCCAGCAGGGTGTGGATCTGCGCCGCCTCCTGCACGACCTTGGGGTAGAACCCGGCCGACTCGCACAGCGCAACCAACTGTTCGTGGTAGCCCCCGCCCAGCGCTTGCgggg < 6:57751/148‑1 (MQ=255) aCCAGGGCCACGCCAAAGCCGCAGGCCACCAGACCCAGCAGGGTGTGGATCTGCGCCGCCTCCTGCACGACCTTGGGGTAGAACCCGGCCGACTCGCACAGCGCAACCAACTGTGCGTGGTAGCCCCCGCCCAGCGCTTGCGGGGTGa > 3:131774/1‑148 (MQ=255) gCCACGCCAAAGCCGCAGGCCACCAGACCCAGCAGGGTGTGGATCTGCGCCGCCTCCTGCACGACCTTGGGGTAGAACCCGGCCGACTCGCACAGCGCAACCAACTGTGCGTGGTAGCCCCCGCCCAGCGCTTGCGGGGTGAacac > 7:26366/1‑146 (MQ=255) cACGCCAAAGCCGCAGGCCACCAGACCCAGCAGGGTGTGGATCTGCGCCGCCTCCTGCACGACCTTGGGGTAGAACCCGGCCGACTCGCACAGCGCAACCAACTGTGCGTGGTAGCCCCCGCCCAGCGCTTGCGGGGTGAACACGAAg > 6:123470/1‑148 (MQ=255) gCCAAAGCCGCAGGCCACCAGACCCAGCAGGGTGTGGATCTGCGCCGCCTCCTGCACGACCTTGGGGTAGAACCCGGCCGACTCGCACAGCGCAACCAACTGTGCGTGGTAGCCCCCGCCCAGCGCTTGCGGGGTGAACACGAAGTcc > 2:82763/1‑148 (MQ=255) gtgGATCTGCGCCGCCTCCTGCACGACCTTGGGGTAGAACCCGGCCGACTCGCACAGCGCAACCAACTGTGCGTGGTAGCCCCCGCCCAGCGCTTGCGGGGTGAACACGAAGTCCTCATCGGCAAACTCGCGCAAGTCGACGGCCTc > 1:117275/1‑147 (MQ=255) ggCCGACTCGCACAGCGCAACCAACTGTGCGTGGTAGCCCCCGCCCAGCGCTTGCGGGGTGAACACGAAGTCCTCATCGGCAAACTCGCGCAAGTCGACGGCCTCGAAACGCGCCATGGGATGGCTGGCGGGCAGCGCCATGACGATc < 7:53983/148‑1 (MQ=255) gCACAGCGCAACCAACTGTGCGTGGTAGCCCCCGCCCAGCGCTTGCGGGGTGAACACGAAGTCCTCATCGGCAAACTCGCGCAAGTCGACGGCCTCGAAACGCGCCATGGGATGGCTGGCGGGCAGCGCCATGACGATCTGCTCGt > 2:95805/1‑146 (MQ=255) acaGCGCAACCAACTGTGCGTGGTAGCCCCCGCCCAGCGCTTGCGGGGTGAACACGAAGTCCTCATCGGCAAACTCGCGCAAGTCGACGGCCTCGAAACGCGCCATGGGATGGCTGGCGGGCAGCGCCATGACGATCTGCTCGTCAag < 7:47044/148‑1 (MQ=255) | TCGCGCGGGGTTGAGCGGACGAAGGACGCCGGCACCAGGGCCACGCCAAAGCCGCAGGCCACCAGACCCAGCAGGGTGTGGATCTGCGCCGCCTCCTGCACGACCTTGGGGTAGAACCCGGCCGACTCGCACAGCGCAACCAACTGTGCGTGGTAGCCCCCGCCCAGCGCTTGCGGGGTGAACACGAAGTCCTCATCGGCAAACTCGCGCAAGTCGACGGCCTCGAAACGCGCCATGGGATGGCTGGCGGGCAGCGCCATGACGATCTGCTCGTCAAG > NC_002947/3603890‑3604167 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |