New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5983868	33 (1.270)	4 (0.160)	3/272	3.4	12.1%	coding (4513/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	= 5983896	27 (1.110)					coding (4541/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGACGCCG  >  NC_002947/5983726‑5984015                                                                                                                                               |                                                                                                                                                    gcACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGaa                                                                                                                                                <  7:48633/148‑1 (MQ=255)  cACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAg                                                                                                                                               >  7:42577/1‑148 (MQ=255)        cAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATc                                                                                                                                          <  5:127232/147‑1 (MQ=255)           gCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCa                                                                                                                                      >  8:12440/1‑148 (MQ=255)                   tgaGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGc                                                                                                                              <  2:75622/148‑1 (MQ=255)                        tGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACg                                                                                                                         >  6:5729/1‑148 (MQ=255)                         gTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACgg                                                                                                                        >  2:59297/1‑148 (MQ=255)                             gCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAACCGCGCCAAACCCGCCCGGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCACCGACAGCGACCGGGCCg                                                                                                                    >  7:41515/1‑148 (MQ=255)                                 ccATCGCCCACGAGATCACCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCaa                                                                                                                <  4:120715/148‑1 (MQ=255)                                         cACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGc                                                                                                        >  7:97320/1‑148 (MQ=255)                                                   gccagccGCTCCTGGGCATCGCCGCCACTGCCGCGGCCAGCCTGCGCTGGCGCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCTGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCg                                                                                              <  4:114387/148‑1 (MQ=255)                                                           cTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCGGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTgg                                                                                      <  3:76437/148‑1 (MQ=255)                                                                  gCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAg                                                                                 <  3:114023/146‑1 (MQ=255)                                                                    aTCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAg                                                                              >  2:135955/1‑147 (MQ=255)                                                                        ccTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCAc                                                                          >  1:59873/1‑147 (MQ=255)                                                                            cAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGAt                                                                      >  4:75943/1‑147 (MQ=255)                                                                             aaTGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATg                                                                     >  3:13542/1‑147 (MQ=255)                                                                              aTGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGc                                                                    <  4:13542/147‑1 (MQ=255)                                                                                  cgcgGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCCCCGATGCAACt                                                                >  6:110930/1‑147 (MQ=255)                                                                                                  tGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTgg                                               <  4:47213/148‑1 (MQ=255)                                                                                                     cTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGAc                                             <  2:59873/147‑1 (MQ=255)                                                                                                        aaaCGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACggg                                                                                                                       >  8:33803/1‑70 (MQ=255)                                                                                                         aaCGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGc                                                                                                                      <  7:33803/70‑1 (MQ=255)                                                                                                                     ccGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAggt                            >  3:118622/1‑148 (MQ=255)                                                                                                                           tGGTAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCCGCCGCTGCGGTCCCTGGACAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGCTGGTgcg                      >  1:76960/1‑148 (MQ=255)                                                                                                                           tGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTgcg                      >  1:76961/1‑148 (MQ=255)                                                                                                                                gaagCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGa                 <  4:96159/148‑1 (MQ=255)                                                                                                                                     gATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCg            <  5:5254/148‑1 (MQ=255)                                                                                                                                           cGGCCTGGAAGACATCCGCCACGACAGCGAACGGGCCGGCAACATCGTGCGGCCGCTGCGGTCCCAGGCCAAGCAGTCACCCCGGCCACTCACGGCGGTGAAGCTGGACGAATAGCTCCCCGAGGGCGAGCGCCTGACCTCGGCCGAc      >  4:3398/1‑148 (MQ=255)                                                                                                                                           cGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCGACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGAc      >  4:61527/1‑148 (MQ=255)                                                                                                                                           cGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGAc      <  4:118622/148‑1 (MQ=255)                                                                                                                                           cGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGAc      <  8:89694/148‑1 (MQ=255)                                                                                                                                               cTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGAcgccg  >  2:97004/1‑148 (MQ=255)                                                                                                                                               |                                                                                                                                                    GCACTTGCAGGCGATGAATGAGCTGTCAGCGTCCATCGCCCACGAGATCAGCCAGCCGCTCCTGGGCATCGCCTCCAATGCCGCGGCCAGCCTGCGCTGGCTCAAACGCGCCAAACCCGACCTGGAAGAAGCGATTGCCGGCCTGGAAGACATCCGCAACGACAGCGAACGGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGACGCCG  >  NC_002947/5983726‑5984015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.