| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2472115 | 9 (0.350) | 5 (0.200) | 5/276 | 2.6 | 27.4% | intergenic (+19/+130) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
| ? | NC_002947 | 2472313 = | 18 (0.730) | coding (1783/1851 nt) | PP_2167 | PhoD‑like phosphatase | |||||
AGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAA > NC_002947/2472189‑2472457 | aGGCGCGGGTTACCCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCt < 5:142543/148‑1 (MQ=255) gggTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCa > 6:143632/1‑148 (MQ=255) tggaggcgcacaagatcctcatgggcctgaatgactccaaccgcgaagccttccatgatctggtcaatgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCAtt > 5:24390‑M2/106‑148 (MQ=255) gcacaagatcctcatgggcctgaatgactccaaccgcgaagccttccatgatctggtcaatgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGc > 7:24446‑M2/99‑148 (MQ=255) tGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCgg < 1:134816/148‑1 (MQ=255) tAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACCCCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGcc > 3:104230/1‑148 (MQ=255) tAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGcc > 8:41639/1‑148 (MQ=255) tgggcctgaatgactccaaccgcgaagccttccatgatctggtcaatgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCtt < 8:24446‑M2/64‑1 (MQ=255) cACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGc > 2:21986/1‑147 (MQ=255) tACGCCCGGTTTTTAAACTATGTAGCCTCCCCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGATGTGGCTGGGCGTAc > 3:98968/1‑148 (MQ=255) ccGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCACCTCGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACCACAGTCCCAGCCCGCCACCAGTCCACAGCCGATCCCCGCCCTTGCTGTGGATGGGCCTACGCGGc > 8:24975/1‑148 (MQ=255) ttccatgatctggtcaatgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCt > 2:17714‑M2/56‑148 (MQ=255) tAGCCTCCCCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCg > 2:10147/1‑148 (MQ=255) tgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTg < 1:17714‑M2/110‑1 (MQ=255) ccccGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCAGTTCTCGGCGCTTgg > 1:101521/1‑147 (MQ=255) cAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTg > 6:73922/1‑140 (MQ=255) aGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTgg < 5:73922/140‑1 (MQ=255) aGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGGCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAg < 5:143632/148‑1 (MQ=255) gCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGt < 4:98968/148‑1 (MQ=255) aTCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCCCCCCCTCCATTTCTCGGCGCTTGGTAAACCAGt > 5:107685/1‑146 (MQ=255) gTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGCCGTACGCGGCACAACCTCCATTTCTCGGCGCTTGGTAAACCAGATGAGCGGCGAg > 4:97511/1‑148 (MQ=255) acCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGcgcg < 5:141120/148‑1 (MQ=255) ccGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTACCCGGCCTTGCTGTGGCTGGCCGTACGCCGCACCACCTACATTTCTCGGCGCTTGGTACACCAGTTGAGCGGCGAGCGCGGt > 2:108708/1‑148 (MQ=255) ccggccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGAGGCGAGCGCGGTGCATa < 5:143444‑M2/142‑1 (MQ=255) gccGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACaa > 5:29990‑M2/4‑148 (MQ=255) | AGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAA > NC_002947/2472189‑2472457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |