Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_002947	5,985,398	Δ11 bp	coding (188‑198/405 nt)	PP_5244 ←	AraC family transcriptional regulator

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5985397	1 (0.010)	67 (0.880)	60/274	0.3	98.5%	coding (199/405 nt)	PP_5244	AraC family transcriptional regulator
	?	NC_002947	5985409 =	1 (0.010)					coding (187/405 nt)	PP_5244	AraC family transcriptional regulator

AAAGCACGGGTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5985249‑5985397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACATGGC  >  NC_002947/5985409‑5985556                                                                                                                                                                                                                                                                                                           AAAGCACGGGTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGA                                                                                                                                                       <  2:70387/148‑1  AAGCACGGGTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAA                                                                                                                                                     <  4:373447/149‑1  AAGCACGGGTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAA                                                                                                                                                      >  1:49628/1‑148    GCACGGGTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAAT                                                                                                                                                   <  1:16496/149‑1        GGGTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCT                                                                                                                                               >  7:328238/1‑149         GGTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTG                                                                                                                                              <  4:249337/149‑1          GTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGC                                                                                                                                             >  2:110832/1‑149                 GGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAAGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAG                                                                                                                                      >  2:390672/1‑149                  GGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGG                                                                                                                                     <  1:155663/149‑1                    CCTGGTCACAAAAGCGGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTT                                                                                                                                   >  8:231294/1‑149                     CTGGTCACAAAAGCCGCAGTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCACGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTG                                                                                                                                  <  6:334912/149‑1                        GTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCAT                                                                                                                               <  6:219901/149‑1                        GTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGC                                                                                                                                 <  5:235553/147‑1                                AGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGC                                                                                                                       >  5:245070/1‑149                                  CCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGA                                                                                                                     >  5:225024/1‑149                                   CGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGAT                                                                                                                    >  4:70245/1‑149                                       TTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTC                                                                                                                 >  5:229856/1‑148                                          CAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGAT                                                                                                              >  6:74825/1‑148                                                 acggcGGTGCTAGGCGCCTCGGTTGCTAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACA                                                                                                      <  8:303701/144‑1                                                 ACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGA                                                                                                        <  8:385486/147‑1                                                       GTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGC                                                                                                <  5:74825/149‑1                                                          ATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTAT                                                                                             >  5:93731/1‑149                                                               CGCCTCGGTTGCAAGCAAGCGCTTGGCCTGTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAAC                                                                                        <  8:69541/149‑1                                                                GCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACA                                                                                       >  8:164614/1‑149                                                                   TCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACAT                                                                                      >  2:443796/1‑147                                                                     GGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATG                                                                                            <  3:61220/139‑1                                                                     GGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATG                                                                                            >  4:61220/1‑139                                                                           AAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTG                                                                            >  6:191323/1‑149                                                                            AGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGG                                                                           >  4:396048/1‑149                                                                             GCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGC                                                                          >  6:51345/1‑149                                                                               AAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCC                                                                        >  6:414192/1‑149                                                                                AGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCG                                                                       >  4:36804/1‑149                                                                                 GCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGG                                                                      >  1:212843/1‑149                                                                                     TTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCG                                                                    >  7:297237/1‑147                                                                                       GGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCA                                                                  <  4:5009/147‑1                                                                                           TTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCG                                                            >  6:238156/1‑149                                                                                              TCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCG                                                          <  3:70245/148‑1                                                                                                 ATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCG                                                      >  7:38512/1‑149                                                                                                 ATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCG                                                      >  3:288467/1‑149                                                                                                  TGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGT                                                     <  1:390672/149‑1                                                                                                  TGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGT                                                     <  7:231294/149‑1                                                                                                  TGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGT                                                     <  7:164614/149‑1                                                                                                  TGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGT                                                     <  7:104749/149‑1                                                                                                    CGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGA                                                   <  5:191323/149‑1                                                                                                     GCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCG                                                                       >  3:432774/1‑128                                                                                                     GCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCG                                                                       <  4:432774/128‑1                                                                                                      CGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGT                                                 <  3:36804/149‑1                                                                                                      CGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGT                                                 >  4:122313/1‑149                                                                                                              GGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGG                                         <  8:328238/149‑1                                                                                                                 GCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGT                                      <  3:396048/149‑1                                                                                                                 GCCAGGCCTGCGGCGAAAGGCCGGTGTTGACATTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGT                                      >  8:121839/1‑149                                                                                                                    AGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTG                                   <  1:443796/149‑1                                                                                                                     GGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGC                                  <  5:51345/149‑1                                                                                                                       CCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGC                                                                >  8:252248/1‑117                                                                                                                       CCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGC                                                                <  7:252248/117‑1                                                                                                                          GCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGG                             >  4:347716/1‑149                                                                                                                          GCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGG                             >  6:13129/1‑149                                                                                                                           CGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGC                            <  8:38512/149‑1                                                                                                                               GAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCC                                                                               <  3:155483/94‑1                                                                                                                               GAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCC                                                                               >  4:155483/1‑94                                                                                                                                  AGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGG                     <  6:245070/149‑1                                                                                                                                     CCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCG                  >  4:300855/1‑149                                                                                                                                          GTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCA             <  5:238156/149‑1                                                                                                                                              ACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGG          >  1:263758/1‑148                                                                                                                                                TTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTA        >  3:223610/1‑148                                                                                                                                                TTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAACTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTA        >  3:233317/1‑148                                                                                                                                                TTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGG                                                                                                  <  5:126196/58‑1                                                                                                                                                TTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGG                                                                                                  >  6:126196/1‑58                                                                                                                                                  TGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACA      <  2:263758/148‑1                                                                                                                                                     AAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAACTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACATGGC  <  4:233317/149‑1                                                                                                                                                                                                                                                                                                           AAAGCACGGGTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5985249‑5985397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACATGGC  >  NC_002947/5985409‑5985556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.