| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,126,647 | +C | intergenic (‑101/+48) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,126,645 | 1 | . | C | 86.8% | 105.9 / 11.8 | 38 | intergenic (‑99/+50) | tdcG‑II/gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base . (5/0); new base C (11/22); total (16/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.70e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTA > NC_002947/1126500‑1126787 | gAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAA‑c < 3:22793/147‑1 (MQ=255) ggggCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAA‑cccgc < 3:122505/149‑4 (MQ=255) gggCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAA‑cccgc < 8:48023/148‑4 (MQ=255) ccgatgccgatCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCt < 7:173594/149‑1 (MQ=255) ccgatCTTTAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTAcaca < 3:30990/148‑1 (MQ=255) gatCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTAACGCGAAAGGGGGGGTT‑TAGCCACCATCGCCATAACGGG‑TGAAA‑CCCCACCTACACacag > 8:29484/1‑149 (MQ=255) ttGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCCCGAAAGCGGGGGGATTAGCC‑CCATGGCCATAGCCGG‑T‑AAACCCGCGCCAACACacagatgg > 4:137332/1‑145 (MQ=255) ttGAACAGGTCCAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGCACATTCACCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTAcaca < 3:137332/142‑1 (MQ=37) aGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCCCGAATGCCGAGGTA‑TAGCCACCAAAGCAATAGCGGG‑TAAAA‑CCGCTCCTAAACACACCCCGCCAcc > 1:37647/1‑148 (MQ=255) tCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTAAACCCGAAAGGGGAGGGT‑TAGGCACCATAGCATTAGCGGG‑TAAAA‑CCCCGCCGACACAGAGcccccccccccac > 5:190046/1‑146 (MQ=255) cGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTAACCGCGAATGCGGAGGTA‑TAGCCCCCATCGCATTAGCGGGTT‑AAC‑CCGCTCCGACACAGAGCCCGcccccccacc > 8:149289/1‑145 (MQ=255) tcaCGGTCAGTGACTGGTGGACCAGCTGCCTGTTTTTTGGGGGAACTTTCAGCCCTGTTGGGGCGGGTTTACGCTTGAATGCGGTTGTA‑TAGCAACATTCGCATTCGCGGT‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAg < 4:167307/147‑1 (MQ=255) cAGTGACATGTGGACCTCCTGCCAGGTGGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCgg < 8:253586/149‑1 (MQ=255) gACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCACCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCa < 7:192490/149‑1 (MQ=255) gACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTAACCCCGAATGCGGAGGTT‑TAGCCACCATCGCATTAGCGGG‑TAAAA‑CCGCACCTACACAGAGCCCCCCACCCAACCCAGGTGGCGGGGAGGGCGAt > 3:230880/1‑147 (MQ=255) tcctccCAGGTTGTTGGGGGCACATTGACCCCTGTAGGCGCGGGTTTACCCGCTAATGCGGAGGTA‑TAGCCACCATCCCATTCGCGGG‑A‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGa < 3:15273/136‑1 (MQ=38) tGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCCCGAATTCGGAGGTA‑TAGCCCCCATAGCAATACCGGG‑G‑AAACCCGCGCCTACACAGAGCCCCCCCCCCAAACCAGGTGGCGGGGAGGGCTATGAGGCGTc > 2:52951/1‑148 (MQ=255) ccAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTc < 1:52951/146‑1 (MQ=255) aGGTGGTTGGGTGCACTTTGCGCCGTGTCGGCGCGGGTTTACCCGCTAATGCGGAGGTT‑TACCCACCAGCGCATGGGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGGCCTGAt < 3:6745/149‑1 (MQ=37) gttgttGGGTGTACATTGAGCCCTGTAGGCGCGGGTTTACCCGCTATTGCGGTGGTA‑TAGCCACCATCGCTTTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGAt < 7:199399/147‑1 (MQ=38) gttgttGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATa < 6:190046/148‑1 (MQ=255) gttgGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGct < 7:149289/148‑1 (MQ=255) ttgGGGGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGctct < 4:326627/149‑1 (MQ=255) taCATTGACCCCTGTAGGCGCGGGATAACCCGCGAATGCGGAGGTA‑TACCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGACGCCTGATAg < 5:86638/137‑1 (MQ=37) aTTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACgg < 7:29484/149‑1 (MQ=255) ttGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACggg < 3:98342/149‑1 (MQ=255) cgcgGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAg > 2:286338/1‑149 (MQ=255) tttACCCGCGAATGCGGAGGTA‑TATCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCg < 2:37647/149‑1 (MQ=255) cccGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCg > 7:310284/1‑149 (MQ=255) ccGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGc > 4:55512/1‑149 (MQ=255) cgcgAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCACGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGcc > 5:200082/1‑149 (MQ=255) gAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCg < 6:200209/140‑1 (MQ=255) gAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCg > 5:200209/1‑140 (MQ=255) gAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAGCACGTTg < 3:55512/149‑1 (MQ=255) gCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCg > 2:47716/1‑149 (MQ=255) caccaTCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGt < 2:80273/140‑1 (MQ=255) caccaTCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGt > 1:80273/1‑140 (MQ=255) cGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcg > 8:183576/1‑149 (MQ=255) gCATTCGCGGG‑T‑AAACCCGCTCCTACAGCTAGCCGGCGACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGca < 4:198118/104‑1 (MQ=38) gCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTCATAGCTCTCGATCGACGGGCAGGCGca > 3:198118/1‑104 (MQ=255) gg‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTa < 4:230880/149‑1 (MQ=255) | GAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTA‑TAGCCACCATCGCATTCGCGGG‑T‑AAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTA > NC_002947/1126500‑1126787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |