New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2301453 =	0 (0.000)	79 (1.320)	58/278	0.1	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase

TGGCTGGTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCC  >  NC_002947/2925284‑2925569                                                                                                                                                  |                                                                                                                                              tggctggTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCa                                                                                                                                            >  3:101789/1‑149 (MQ=255)     tggTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCa                                                                                                                                        >  4:226438/1‑149 (MQ=255)            gcaACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTc                                                                                                                                 >  2:270410/2‑149 (MQ=255)             caACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTcc                                                                                                                                <  8:249746/149‑1 (MQ=255)              aaCGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCg                                                                                                                               <  6:173548/149‑1 (MQ=255)                cGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCggg                                                                                                                             <  1:50876/149‑1 (MQ=255)                  cTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCt                                                                                                                           >  8:163693/1‑149 (MQ=255)                   tAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTg                                                                                                                          >  1:28301/1‑149 (MQ=255)                        catgcaggctgATGGCGCCAATATTTGAATGCTGCCTTGCGATTGCAGTGTAGGTCCAGGTCCGCAAGCGTGCCCCCATAAAACCCTGCTATCCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTgcg                                                                                                                        <  4:179299/140‑1 (MQ=255)                                        gcCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGcc                                                                                                                                     >  8:41472/1‑117 (MQ=255)                                        gcCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGcc                                                                                                                                     <  7:41472/117‑1 (MQ=255)                                        gcCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCAAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAg                                                                                                      >  3:224260/1‑148 (MQ=255)                                           aaTATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATg                                                                                                 >  6:83890/1‑149 (MQ=255)                                           aaTATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATg                                                                                                 >  6:10624/1‑149 (MQ=255)                                             tatTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATgcg                                                                                               <  3:242244/149‑1 (MQ=255)                                                 tGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCAt                                                                                            <  7:163693/148‑1 (MQ=255)                                                 tGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCAt                                                                                            >  8:254972/1‑148 (MQ=255)                                                  caaGGATGCATTGCGATAGCCGGGCAGCTCCAGGGCCGCAAGCGTGCACCCATAAAACCCTGCTAACCAGAAGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTAAGGGCAGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGa                                                                                          >  3:123317/2‑149 (MQ=37)                                                   aaGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGAc                                                                                         <  2:28301/149‑1 (MQ=255)                                                     ggCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGt                                                                                       >  2:268611/1‑149 (MQ=255)                                                                     ccGGGCAGGTCCAGGGACGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACa                                                                       <  1:38540/149‑1 (MQ=255)                                                                        ggCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCggg                                                                                                                             <  6:227092/93‑1 (MQ=255)                                                                            ggTCCAGGGCCGCTAGCGTGCACACATAAAACGCTGATAACCCGACGGGTTAGCGGTTGTTCCATGTGAGATCACCCAGCGCTTCCGGGCTGCGCTGTCGCAGAGCATACTGT‑ATGCTCATGACGTCAGATCTGCACTGTCATCGAGAt                                                                <  4:123317/149‑1 (MQ=21)                                                                             gTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATc                                                               >  8:69099/1‑149 (MQ=255)                                                                              tCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATc                                                               >  3:234957/1‑148 (MQ=255)                                                                              tCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATc                                                               >  8:161741/1‑148 (MQ=255)                                                                               ccAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATc                                                               >  7:328207/1‑147 (MQ=255)                                                                                cAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTa                                                             <  7:260319/148‑1 (MQ=255)                                                                                 aGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGa                                                           <  5:10624/149‑1 (MQ=255)                                                                                    gCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGaaaa                                                        <  5:189885/149‑1 (MQ=255)                                                                                          aGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTc                                                  <  8:328207/149‑1 (MQ=255)                                                                                           gCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGAt                                                                <  2:346088/134‑1 (MQ=255)                                                                                           gCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGAt                                                                >  1:346088/1‑134 (MQ=255)                                                                                           gCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCg                                                 <  5:83890/149‑1 (MQ=255)                                                                                            cGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGAATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCg                                                 <  1:268611/149‑1 (MQ=255)                                                                                                 ccccATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCAtt                                                   >  7:64951/1‑141 (MQ=255)                                                                                                 ccccATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCAtt                                                   <  8:64951/141‑1 (MQ=255)                                                                                                  cccATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACt                                           >  1:34711/1‑148 (MQ=255)                                                                                                           cccTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTa                                 <  7:161741/149‑1 (MQ=255)                                                                                                             cTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAgg                               >  1:194445/1‑149 (MQ=255)                                                                                                               gCTAACCCGTCGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGt                              >  6:88481/1‑148 (MQ=255)                                                                                                                   aCCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAgcc                         >  4:64041/1‑149 (MQ=255)                                                                                                                                gCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGTGTAGGTCAGCCGCCGAATACTTTg            >  6:101596/1‑149 (MQ=255)                                                                                                                                   gttgttCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTa         >  4:294275/1‑149 (MQ=38)                                                                                                                                       ttCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATgg      <  4:224260/148‑1 (MQ=35)                                                                                                                                          cATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTcc  <  7:254972/149‑1 (MQ=32)                                                                                                                                                  |                                                                                                                                              TGGCTGGTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG‑ATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCC  >  NC_002947/2925284‑2925569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.