| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 6,056,675 | (GCACCG)2→1 | coding (802‑807/927 nt) | oxyR → | oxidative and nitrosative stress transcriptional dual regulator |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 6056667 | 6056672 | 6 | 57 [0] | [0] 58 | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6056673 = | 0 (0.000) | 52 (0.900) | 47/268 | 0.3 | 100% | coding (800/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
| ? | NC_002947 | = 6056666 | 0 (0.000) | coding (793/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator | |||||
AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCATGAGTGAGCT > NC_002947/6056520‑6056814 | aaGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcg < 6:143929‑M2/149‑3 (MQ=255) gCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggca > 5:227305‑M2/1‑144 (MQ=255) tCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcacc < 3:225198‑M2/149‑8 (MQ=255) cacGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCTGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacgg < 6:107141‑M2/149‑19 (MQ=255) cacGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATCGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTTCGCCCCTTGAcggcaccgttcagcacgc < 7:284856‑M2/149‑19 (MQ=255) gAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccat < 4:276814‑M2/149‑26 (MQ=255) tCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgc > 3:81916‑M2/1‑121 (MQ=255) aGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatc < 3:162656‑M2/144‑27 (MQ=255) aGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatc > 4:162656‑M2/1‑118 (MQ=255) aCTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcac > 6:9122‑M2/1‑113 (MQ=255) aCTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcac < 5:9122‑M2/119‑7 (MQ=255) cTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgc > 7:15661‑M2/1‑112 (MQ=255) cTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgc > 7:185588‑M2/1‑112 (MQ=255) cTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgc > 4:225198‑M2/1‑112 (MQ=255) ggAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgca < 3:62270‑M2/125‑16 (MQ=255) ggAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgca > 4:62270‑M2/1‑110 (MQ=255) gAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccag > 7:239960‑M2/1‑109 (MQ=255) gAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgcca > 4:198275‑M2/1‑109 (MQ=255) acaTGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggcc < 3:56586‑M2/148‑53 (MQ=255) tggtggCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaag > 3:276814‑M2/1‑93 (MQ=255) gtggCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggc < 6:217737‑M2/149‑59 (MQ=255) gCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccat < 6:29946‑M2/149‑62 (MQ=255) gCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccat > 6:149010‑M2/1‑88 (MQ=255) ccGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcga > 5:107141‑M2/1‑84 (MQ=255) cGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgaga > 2:23523‑M2/1‑83 (MQ=255) gCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatc < 2:274982‑M2/149‑69 (MQ=255) ggCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgc < 6:227852‑M2/149‑74 (MQ=255) ggCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcg > 5:143929‑M2/1‑76 (MQ=255) ggCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctc > 7:139037‑M2/1‑76 (MQ=255) gCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgc > 2:346564‑M2/1‑75 (MQ=255) tCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattc < 7:25130‑M2/149‑80 (MQ=255) gATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcga < 3:348027‑M2/149‑82 (MQ=255) aTCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgat < 7:21998‑M2/149‑83 (MQ=255) tCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatc < 3:60141‑M2/149‑84 (MQ=255) gCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatg > 5:29946‑M2/1‑62 (MQ=255) ccGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcct > 1:274982‑M2/1‑61 (MQ=255) gCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgcc < 4:128817‑M2/148‑102 (MQ=255) ccaccaCTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaacc < 4:211852‑M2/149‑109 (MQ=255) cacTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgc < 6:34515‑M2/149‑113 (MQ=255) acTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggccccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcg < 6:360819‑M2/149‑114 (MQ=255) ccccGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaac > 4:134021‑M2/1‑29 (MQ=255) cccGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaacc < 6:36228‑M2/149‑122 (MQ=255) ccGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccg > 5:217737‑M2/1‑27 (MQ=255) ggcggcATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggc > 6:228982‑M2/1‑25 (MQ=255) cGTCTTAGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcct > 8:284856‑M2/1‑23 (MQ=255) aTCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcctgagt > 4:60141‑M2/1‑19 (MQ=255) aTCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcctgagt < 2:317923‑M2/149‑131 (MQ=255) aTCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgccaggcgcgccagcttcccgccgccaaacaccatcgagatcctcgccgattcgatccgcctgtgctcggtcgcaaaaaacactgcggaacaaccggcctgagt < 6:227636‑M2/149‑131 (MQ=255) tCGAAGTGCTCCCGTTGAcggcaccgttccgcacggtagccatcgcctgtcgcgccagcttgcggcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcggcaaaaaccgtgcgtaacaaccggcctgagtc > 5:227636‑M2/1‑18 (MQ=255) aaGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcctgagtcat < 6:93373‑M2/148‑134 (MQ=255) gTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcctgagtcatgag > 3:211852‑M2/1‑13 (MQ=255) cgcCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcctgagtcatgagtga > 5:93373‑M2/1‑10 (MQ=255) cgcCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcctgagtcatgagtg > 5:36228‑M2/1‑10 (MQ=255) ccGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggactgagtcatgagtgagct < 6:265894‑M2/149‑143 (MQ=255) gTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcctgagtcatgagtgagc > 6:96367‑M2/1‑5 (MQ=255) gTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcctgagtcatgagtgagc < 5:96367‑M2/146‑142 (MQ=255) acggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcctgagtcatgagtgagctgtcgaa > 4:348027‑M2/1‑1 (MQ=255) | AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCATGAGTGAGCT > NC_002947/6056520‑6056814 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |