| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,842,896 | Δ1 bp | 15.1% | intergenic (+40/‑257) | ccoP‑II → / → PP_4259 | cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,842,896 | 0 | C | . | 15.1% | 132.3 / 22.3 | 53 | intergenic (+40/‑257) | ccoP‑II/PP_4259 | cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein |
| Reads supporting (aligned to +/- strand): ref base C (22/22); new base . (2/6); total (25/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.85e-03 | |||||||||||
GGGGCAGATGCCGGCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑CGCGACTAAAGGTCGCAGTGCGAACCC > NC_002947/4842748‑4843043 | ggggCAGATGCCGGCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTacac < 2:252114/149‑1 (MQ=255) cAGATGCCGGCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGa < 6:289120/149‑1 (MQ=255) aTGCCGGCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATcc > 5:103399/1‑149 (MQ=255) aTGCCGGCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATcc > 8:160230/1‑149 (MQ=255) gCCGGCCCATGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCAGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGTTccgt > 8:24778/1‑147 (MQ=255) ccGGCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCt‑t < 7:337678/148‑1 (MQ=255) ggCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTa < 1:160328/149‑1 (MQ=255) gCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAg < 6:20143/149‑1 (MQ=255) ccAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACA‑AGGATCCTGTGTAGGa < 7:298102/149‑1 (MQ=255) aGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACA‑AGGATCCTGTGTAGGAGc < 5:190544/149‑1 (MQ=255) aGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACA‑AGGATCCTGTGTAGGAGc < 2:156573/149‑1 (MQ=255) gAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCgg < 1:144539/149‑1 (MQ=255) gAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACA‑AGGATCCTGTGTAGGAGCgg < 6:44254/149‑1 (MQ=255) gAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACA‑AGGATCCTGTGTAGGAGCgg < 6:385619/149‑1 (MQ=255) gAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGGCGCTCCATGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGGGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCgg < 2:52462/149‑1 (MQ=255) caacTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGtt > 8:238045/1‑149 (MQ=255) caacTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGtt < 2:83132/149‑1 (MQ=255) cTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACCAAGGATCCT‑TGTAGGAGCGGGTTTAc > 4:76054/1‑149 (MQ=255) cAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACA‑AGGATCCTGTGTAGGAGCGGGTTTAccc < 2:43677/148‑1 (MQ=255) aaCGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCGCCTACCCAGGAGACG‑TGTTGGAGCGGGTGTAGCcccgga > 7:151428/1‑145 (MQ=255) aaGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTa < 2:371233/121‑1 (MQ=255) aaGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTa > 1:371233/1‑121 (MQ=255) ccTTGCTGGCGGCTTCCGGCTACAGCCTGTCGCCCCCGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAC‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGc < 8:285851/148‑1 (MQ=37) aCTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTgg > 7:285851/1‑148 (MQ=255) gCTGGCGGCTTACGACTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCACCTACACAGCTTCCT‑TGTAGGATCGGGTTTAACCCCGAAGAGGCCGGTACTGGCACAg > 8:347871/1‑149 (MQ=38) gcggcTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCa < 5:308881/147‑1 (MQ=255) cggcTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCAttt < 7:238045/149‑1 (MQ=255) ttACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCg > 3:237310/1‑149 (MQ=255) cttCTACCGCCGGTCGCACCAGGCTGAGCCGGCCACGGCTTAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGCATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCa < 8:12288/146‑1 (MQ=37) tACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCCGGTAAA‑‑ACCGCTCCTAAACAGGATCCG‑TGTAGGAGCGGGTTTTACCGCGAAGAGGCCCGTTCTGGCACAGCATTTCTCGCAGGc > 8:22575/1‑147 (MQ=255) cTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑ACCCCAACTACACAACATGCA‑TCTAGGAGCCGGATTACCCCCGAAAAAGCCCGTACAGGCAAAGCCATTCACGCACCCAAGTGaa > 6:342829/1‑147 (MQ=255) gTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAACCCCCGCTACTACACACGATCCG‑TGTAGGAGCGGGTTTACCCGCGCATCGGCCGGTACTGGCACAGCATTTCTAGCAGGCAAGTGAcc > 1:107720/1‑149 (MQ=38) tCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTgg < 4:205665/149‑1 (MQ=255) cAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAAt < 2:112423/149‑1 (MQ=255) ggtGAGCCGGCCATGGCTGAGTATGGCAGGCGTGGCCTGTTCGCGGTTAAA‑‑CCCGCTCCTACACTGGTTCCT‑TTTAGGTGGGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAAtt < 5:342829/145‑1 (MQ=37) cAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTGCTACCCAGGATGCT‑TGGTGGGGCGGGTTTACCCGCGGAGAGGCCGGGTCGGGCCCAGCATTTGTGGCGGGGAAGTGGCCTGGATGAATTGAGACCCGCCAt > 4:82282/1‑148 (MQ=21) tGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTTAA‑‑ACCCCGGCGTCCCAGGAGCAG‑TGGAGGGGCGGGTTTACCCCGGAAACGGCCCGGACAGGGGGAGGAATTGTCGCAGGGAAGTGAAGTGGGTCGAGTGGCGCCCGCCGTaaaagct > 8:23546/1‑144 (MQ=255) aGTACGGCAGGCCTGGCCTCTTCGCGGGTAAC‑‑CCCGCTCCTACACCGGATCCT‑TGTAGGAGCGGTTTAACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGtt < 1:292073/148‑1 (MQ=38) aaGGCAGGCCTGGCCTCTTCGCGGGACAC‑‑CCCGCTCCTACACAGCATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCa < 6:330736/148‑1 (MQ=255) aggcaggcCTGGCCTCTTCGCGGGTAAA‑‑CCCCCTACTACACAGGATCCT‑TGTATGAGCGGGGTTAACCGCGAAGAGGCCGGTACTGGGACAGCATTTGTGCCAGGCAAGTGACCAGGAAAAATTTAAACCCCCCAAAAAAAGTTTCATa > 6:151925/1‑149 (MQ=21) cctggcctGTTCGCGGGTAAA‑‑CCCGCTCCTACACCGGATCCT‑TGTAGGAGCGGTTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGaa < 7:22575/149‑1 (MQ=255) cctggcctCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGaa < 4:237310/149‑1 (MQ=255) tggcctCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAAcc > 2:255612/1‑149 (MQ=255) ttCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGTAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑cg < 3:76054/147‑1 (MQ=255) gggTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑CGCGACTa > 1:242485/1‑148 (MQ=255) tAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑CGCGACTAAAgg > 2:193047/1‑149 (MQ=255) tAAA‑‑CCCGCTCCTACA‑AGGATCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑CGCGACTAAAgg > 2:84828/1‑149 (MQ=255) aaa‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑CGCGACTAAAGGt > 6:287374/1‑149 (MQ=255) a‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTTGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑CGCGa < 7:76847/139‑1 (MQ=255) a‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑CGCGa > 8:76847/1‑139 (MQ=255) ccGCTCCTACA‑AGGATCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑CGCGACTAAAGGTCg > 5:45514/1‑147 (MQ=255) ccTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑CGCGACTAAAGGTCGCAGTGCg < 2:242485/149‑1 (MQ=255) cTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑CGCGACTAAAGGTCGCAGTGCg > 2:41876/1‑148 (MQ=255) tACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑CGCGACTAAAGGTCGCAGTGCGaa > 5:356291/1‑149 (MQ=255) caGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAACCGCGACTAAAGGTCGCAGTGCGAAccc < 1:193047/149‑1 (MQ=255) caGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑CGCGACTAAAGGTCGCAGTGCGAAccc > 3:100542/1‑148 (MQ=255) | GGGGCAGATGCCGGCCCAGGAACAACTGCAGGGCAACGACAAGGTGCACTTGCTGGCGGCTTACGTCTACAGCCTGTCGCACCAGGCTGAGCCGGCCAAGGCTGAGTAAGGCAGGCCTGGCCTCTTCGCGGGTAAA‑‑CCCGCTCCTACACAGGATCCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGGCACAGCATTTCTCGCAGGCAAGTGACCTGGATCAATTGACACCCGCCATAACACGTTTCATACCACGAACCCAA‑CGCGACTAAAGGTCGCAGTGCGAACCC > NC_002947/4842748‑4843043 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |