Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	1,052,858	Δ1 bp	5.4%	coding (509/1428 nt)	PP_0910 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,052,858	0	T	.	5.4%	239.2 / 6.2	74	coding (509/1428 nt)	PP_0910	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (35/35);  new base . (2/2);  total (37/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGCCCAGGCCGATCATTGGTGGTGCCACCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGTTGGTCGGGGATCGACAGGCGTACCAGCAT  >  NC_002947/1052712‑1053006                                                                                                                                                   |                                                                                                                                                       ggcccaggccGATCATTGGTGGTGCCACCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAg                                                                                                                                                      <  7:50768/149‑1 (MQ=255) ggcccaggccGATCATTGGTGGTGCCACCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAg                                                                                                                                                      <  6:71438/149‑1 (MQ=255)    ccaggccGATCATTGGTGGTGCCACCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCt                                                                                                                                                    >  4:158123/1‑148 (MQ=255)    ccaggccGATCATTGGTGGTGCCACCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCt                                                                                                                                                    >  4:81465/1‑148 (MQ=255)     caggccGATCATTGGTGGTGCCACCCGCTCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGTGTGATTTGCATGTCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGTGTTTCGCGGGTGTAGCT‑Ca                                                                                                                                                 <  3:51265/149‑1 (MQ=255)          cGATCATTGGTGGTGCCAGCGGCGGAGAAAAACGCGTGTCGGGGTGCATCAGTCGATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTG‑AGCTACAC‑CCGc                                                                                                                                           <  4:371629/149‑1 (MQ=255)           gATCATTGGTGGTGCCACCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCa                                                                                                                                          <  1:160800/149‑1 (MQ=255)               aTTGGTGGTGCCACCGGCGCAGATAAAGGGGTGGCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CTC‑GCGCACCtt                                                                                                                                      <  2:288969/149‑1 (MQ=255)               aTTGGTGGTGCCACCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCtt                                                                                                                                      <  5:240261/149‑1 (MQ=255)               aTTGGTGGTGCCACCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCtt                                                                                                                                      <  8:342550/149‑1 (MQ=255)                ttGGTGGTGCCACCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTg                                                                                                                                     >  6:192977/1‑149 (MQ=255)                   gtggtgCCACCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCt                                                                                                                                  >  4:85771/1‑149 (MQ=255)                   gtggtgCCACCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCt                                                                                                                                  >  6:250445/1‑149 (MQ=255)                        gCCACCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGCTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATCACAGGGTTTCGCGGTTGTAGCT‑CAC‑CCGCACCTTGCATTCggg                                                                                                                             >  6:382006/1‑149 (MQ=255)                         ccACCCGCGCAGAAAACCGCGGGTCGGGGTGCATCACTCCATCGCCGCGCTGGGTGATTTGCCGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGCAGGACAGGGGTTCGCGGGGGTAGCT‑CAC‑CCGCACCTTGCCTTCggg                                                                                                                             <  3:208476/148‑1 (MQ=255)                           aCCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGgcgc                                                                                                                          >  3:100655/1‑149 (MQ=255)                           aCCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGgcgc                                                                                                                          >  4:231080/1‑149 (MQ=255)                           aCCCGCGCAGAAAAACGCGTGTCGGGGGGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGGTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGgcgc                                                                                                                          <  5:315810/149‑1 (MQ=255)                            cccGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGcc                                                                                                                         <  3:158123/149‑1 (MQ=255)                                   aGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCgg                                                                                                                  <  3:113060/149‑1 (MQ=255)                                       aaaCGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTAt                                                                                                              >  8:70323/1‑149 (MQ=255)                                          cgcgTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGc                                                                                                           <  5:192977/149‑1 (MQ=255)                                              tgtCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATg                                                                                                       <  8:217466/149‑1 (MQ=255)                                                tCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTc                                                                                                     <  3:133265/149‑1 (MQ=255)                                                   ggggGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CACACCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCt                                                                                                   <  1:264878/149‑1 (MQ=255)                                                         aTCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTg                                                                                            >  7:319104/1‑149 (MQ=255)                                                         aTCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTg                                                                                            >  3:140370/1‑149 (MQ=255)                                                         aTCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTg                                                                                            >  4:371667/1‑149 (MQ=255)                                                         aTCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTg                                                                                            >  3:134715/1‑149 (MQ=255)                                                           cACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTggg                                                                                          >  8:33593/1‑149 (MQ=255)                                                              tCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTAc                                                                                       >  3:61266/1‑149 (MQ=255)                                                              tCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGAGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTAc                                                                                       >  3:43817/1‑149 (MQ=255)                                                                cATAGCCGAGCTGGGTGATTTGCAGTGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCTCGGCGGGTATGGCCATGTCCTGCAACTGGGTAcc                                                                                      <  5:250445/148‑1 (MQ=255)                                                                cATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCg                                                                                     >  1:13718/1‑149 (MQ=255)                                                                cATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCg                                                                                     >  8:115592/1‑149 (MQ=255)                                                                    gCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGa                                                                                 >  1:81163/1‑149 (MQ=255)                                                                     ccGAGCTCGGAGATTTGCAGGGCTGGCTTGAGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCTCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCAGGGTATGGCCATGTCCTCAAACTGCCTACCGTAGAc                                                                                >  6:133446/1‑149 (MQ=255)                                                                           tGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGctc                                                                          <  2:81163/149‑1 (MQ=255)                                                                             ggTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTg                                                                        >  2:349573/1‑149 (MQ=255)                                                                              gTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACg                                                                               <  3:284553/141‑1 (MQ=255)                                                                              gTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACg                                                                               >  4:284553/1‑141 (MQ=255)                                                                                  tttGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGcac                                                                    >  5:127774/1‑148 (MQ=255)                                                                                    tGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGCGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGcacca                                                                  <  4:43817/148‑1 (MQ=255)                                                                                     gCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACg                                                                >  7:85230/1‑149 (MQ=255)                                                                                       aGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTTGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGcc                                                              >  5:141942/1‑149 (MQ=255)                                                                                          gctggctTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTgg                                                                                           >  8:60615/1‑117 (MQ=255)                                                                                          gctggctTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTgg                                                                                           <  7:60615/117‑1 (MQ=255)                                                                                              gctTGCGCAGCTCGACCTTATGGACGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTgg                                                                       <  6:152990/133‑1 (MQ=255)                                                                                              gctTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGAGGGAGTAGCT‑CAC‑CCGCACCTTGCCTTCGCGCGCCACGCCGGGAATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTgg                                                                       >  5:152990/1‑133 (MQ=255)                                                                                                ttGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGGCGGGCTCTGGCACCACGCCGAGGCGCTc                                                     >  2:187357/1‑149 (MQ=255)                                                                                                ttGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTc                                                     >  3:49022/1‑149 (MQ=255)                                                                                                    gcAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATc                                                 <  3:13132/149‑1 (MQ=255)                                                                                                    gcAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATc                                                 <  7:33593/149‑1 (MQ=255)                                                                                                      aGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCAc                                               >  3:298607/1‑149 (MQ=255)                                                                                                        cTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACtt                                             >  3:282213/1‑149 (MQ=255)                                                                                                           gACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACttt                                            <  4:298607/147‑1 (MQ=255)                                                                                                           gACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACttt                                            <  4:100655/147‑1 (MQ=255)                                                                                                           gACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTgg                                          <  6:127774/149‑1 (MQ=255)                                                                                                           gACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTg                                           <  3:81465/148‑1 (MQ=255)                                                                                                           gACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTg                                           <  3:371667/148‑1 (MQ=255)                                                                                                            aCCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGc                                         <  7:70323/149‑1 (MQ=255)                                                                                                             ccTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGcc                                        <  4:49022/149‑1 (MQ=255)                                                                                                                      cGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCAGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACTCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGt                               >  1:285610/1‑149 (MQ=255)                                                                                                                           ttGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGTTGGTc                          >  7:295184/1‑149 (MQ=255)                                                                                                                             gAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGTTGGTCg                         <  4:61266/148‑1 (MQ=255)                                                                                                                              aaTGACAGGGTTTCTCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCGATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGTTGGTCggg                       <  5:133446/149‑1 (MQ=255)                                                                                                                               aTGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGTTGGTCgggg                      <  3:231080/149‑1 (MQ=255)                                                                                                                                    aGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCa                                                <  6:8332/118‑1 (MQ=255)                                                                                                                                    aGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCa                                                >  5:8332/1‑118 (MQ=255)                                                                                                                                       gTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGTTGGTCGGGGATCGACAg              >  7:149383/1‑149 (MQ=255)                                                                                                                                          tCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGTTGGTCGGGGATCGACAGGc            <  5:172268/148‑1 (MQ=255)                                                                                                                                          gtgcgGGTG‑AGCTACAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGTTGGTCGGGGAt                    <  5:273351/138‑1 (MQ=255)                                                                                                                                          gtgcgGGTG‑AGCTACAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGTTGGTCGGGGAt                    >  6:273351/3‑140 (MQ=255)                                                                                                                                          gtgcgGGTG‑AGCTACAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGTTGGTCGGGGATCGACAGGCg           >  1:278170/3‑149 (MQ=255)                                                                                                                                                 tgtAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGTTGGGCGGGGATCGACAGGCGTACCAGc    <  7:115592/149‑1 (MQ=255)                                                                                                                                                   tAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGGCGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGTTGGTCGGGGATCGACAGGCGTACCAGCAt  <  1:187357/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                       GGCCCAGGCCGATCATTGGTGGTGCCACCCGCGCAGAAAAACGCGTGTCGGGGTGCATCACTCCATAGCCGAGCTGGGTGATTTGCAGGGCTGGCTTGCGCAGCTCGACCTGATGGCCGTCCTTGAATGACAGGGTTTCGCGGGTGTAGCT‑CAC‑CCGCACCTTGCCTTCGGGCGCCACGCCGGGTATGGCCATGTCCTGCAACTGGGTACCGTAGACGGGCTCTGGCACCACGCCGAGGCGCTCGATCACTTTGGCCAGGTAGGGTTGGTCGGGGATCGACAGGCGTACCAGCAT  >  NC_002947/1052712‑1053006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑