| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,867,733:1 | +C | 6.1% | intergenic (‑28/+24) | thyA ← / ← lgt | thymidylate synthase/prolipoprotein diacylglyceryl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,867,733 | 1 | . | C | 6.1% | 398.3 / 17.1 | 99 | intergenic (‑28/+24) | thyA/lgt | thymidylate synthase/prolipoprotein diacylglyceryl transferase |
| Reads supporting (aligned to +/- strand): ref base . (48/45); new base C (4/2); total (52/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.80e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.63e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
CCTTCTGCAGGTCGAAACGCAGCATCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGTT > NC_002947/5867585‑5867881 | ccTTCTGCAGGTCGAAACGCAGCATCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAgggg > 5:13413/1‑149 (MQ=255)ccTTCTGCAGGTCGAAACGCAGCATCGCGCCC‑GCCAGGCGGAAGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGTACCAGGTCCAGATACTGTTTCATGTCTTACATGTAGCAATAACGGCAgggg > 1:276843/1‑149 (MQ=255) ttCTGCAGGTCGAAACGCAGCATCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑Ga > 6:139165/1‑149 (MQ=255) tGCAGGTCGAAACGCAGCATCGCGCCCGGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATc > 1:22696/1‑149 (MQ=255) tGCAGGTCGAAACGCAGCATCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCg > 2:83258/1‑149 (MQ=255) cAGGTCGAAACGCAGCATCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATc < 2:110827/146‑1 (MQ=255) cAGGTCGAAACGCAGCATCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCg < 3:111939/147‑1 (MQ=255) aGGTCGAAACGCAGCATCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGccc > 8:243155/1‑149 (MQ=255) tCGAAACGCAGCATCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTg > 4:128891/1‑149 (MQ=255) gAAACGCAGCATCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGcg > 4:363894/1‑148 (MQ=255) gAAACGCAGCATCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGcc > 4:245201/1‑149 (MQ=255) aCGCAGCATCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTg < 2:351288/149‑1 (MQ=255) cGCAGCATCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTCCCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg < 2:311625/149‑1 (MQ=255) gcagcaTCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg > 5:77701/1‑148 (MQ=255) cagcaTCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGCCGttttt < 3:128891/149‑5 (MQ=255) agcaTCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGAt < 5:124226/149‑1 (MQ=255) agcaTCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGAt < 1:83258/149‑1 (MQ=255) c‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCgg > 4:104291/1‑149 (MQ=255) gCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCg < 8:159427/149‑1 (MQ=255) cTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGc < 5:364921/149‑1 (MQ=255) cTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGc > 6:252542/1‑149 (MQ=255) tGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGcc > 8:285354/1‑149 (MQ=255) gTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGCACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAgg < 8:25426/149‑1 (MQ=255) ggATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTg < 7:285354/149‑1 (MQ=255) gATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGc < 8:209128/149‑1 (MQ=255) tGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGa < 5:76879/149‑1 (MQ=255) gCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGa < 6:13413/148‑1 (MQ=255) cGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATta > 1:19294/1‑149 (MQ=255) gTGCGGTTTCCCTGCAACGTGCCGTTTTCAATGACGTCGCGGACCAGGTCCAGTTACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATtat > 1:195769/1‑148 (MQ=255) tGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATaa < 3:245201/149‑1 (MQ=255) ccTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCccacca < 1:305403/148‑1 (MQ=255) tGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGa > 5:173791/1‑148 (MQ=255) tGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATAAGGCGCGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGa > 7:136100/1‑148 (MQ=255) gCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGAGGGTTTCGCCGTAGGCTTGCGATTACAAGCCCACCAGAt > 8:219996/1‑148 (MQ=255) aaCGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAGTCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATc > 1:331621/1‑147 (MQ=255) aaCGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCaa < 6:77701/149‑1 (MQ=255) cGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGa < 7:114864/149‑1 (MQ=255) ccGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAg < 5:139165/149‑1 (MQ=255) gTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGc > 5:216522/1‑149 (MQ=255) ttATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGAGTACCTTTATCAAAAACGGCAGGGG‑GATCGCCCCTGCGGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGcc < 5:26773/149‑1 (MQ=255) aTCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCAc > 7:208375/1‑149 (MQ=255) tCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAGTCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGTCAc < 2:331621/148‑1 (MQ=255) tCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCg > 5:237535/1‑103 (MQ=255) tCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGAAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCg < 6:237535/103‑1 (MQ=255) aaTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGtt < 8:150861/98‑1 (MQ=255) aaTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGtt > 7:150861/1‑98 (MQ=255) aaTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGa > 2:95698/1‑149 (MQ=255) aaTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGa > 3:184450/1‑149 (MQ=255) aTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCg > 1:171422/1‑113 (MQ=255) aTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCg < 2:171422/113‑1 (MQ=255) tGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACt < 1:347233/149‑1 (MQ=255) gACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGAt < 5:184795/81‑1 (MQ=255) gACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGAt > 6:184795/1‑81 (MQ=255) gTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatca > 5:318234/1‑149 (MQ=255) tCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatcat > 3:33362/1‑149 (MQ=255) gACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAACACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTATGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGaa < 1:180383/149‑1 (MQ=255) aCCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAAt < 1:26907/149‑1 (MQ=255) ccAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATg > 2:15054/1‑149 (MQ=255) gggcccgATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCAGCCGTGGGTTGATTAAGGCGGGTTTCGCCGTAGGCTTGAGATTAAACGCCCACCAGATAAAGACGAGGCCACCGACTATCATCGCAATGca > 7:43553/7‑148 (MQ=255) ggTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATg > 8:12927/1‑146 (MQ=255) ggTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATg < 7:12927/146‑1 (MQ=255) gTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGcaca < 6:318234/149‑1 (MQ=255) aGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCa > 4:95527/1‑148 (MQ=255) aGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCa > 1:336114/1‑148 (MQ=255) gATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAAc > 3:133162/1‑149 (MQ=255) cTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGc > 4:264331/1‑149 (MQ=255) tGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGcc > 1:199810/1‑149 (MQ=255) tttCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGcc < 3:363894/147‑1 (MQ=255) tttCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCtt > 3:191533/1‑149 (MQ=255) tttCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCtt < 5:252542/149‑1 (MQ=255) tCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCtt > 2:34800/1‑147 (MQ=255) cATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga < 2:195769/148‑1 (MQ=255) cATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga < 1:3995/148‑1 (MQ=255) cATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga < 3:95527/148‑1 (MQ=255) aTGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagt < 6:173791/149‑1 (MQ=255) aTGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagt > 5:75512/1‑149 (MQ=255) gCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTATGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagtga < 7:243155/148‑1 (MQ=255) cTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagtgag < 2:336114/148‑1 (MQ=255) cTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagc > 2:106788/1‑149 (MQ=255) ttACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagc > 2:265564/1‑148 (MQ=255) aCCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccag > 3:163901/1‑149 (MQ=255) ccTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccag < 4:227614/148‑1 (MQ=255) ccTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccag < 2:19294/148‑1 (MQ=255) tGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGa < 8:187595/96‑1 (MQ=255) tGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGa > 7:187595/1‑96 (MQ=255) tAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGaa > 1:179963/1‑149 (MQ=255) gCAAAAACGGCAGGGG‑GATCGCCACTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAAcg > 3:25222/1‑149 (MQ=255) cAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAAcgc < 7:103184/149‑1 (MQ=255) aaaaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAAcgcg < 7:157940/149‑1 (MQ=255) aaaaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAAcgc > 8:157940/1‑148 (MQ=255) aaaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGa < 4:184450/149‑1 (MQ=255) ccaCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGAt > 6:184378/3‑149 (MQ=255) aaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGAt < 4:133162/149‑1 (MQ=255) cGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga < 1:141558/126‑1 (MQ=255) cGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga > 2:141558/1‑126 (MQ=255) cGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGt > 5:241731/1‑148 (MQ=255) gCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAAc > 7:239958/1‑149 (MQ=255) aGGGG‑AATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAAcc > 6:49127/1‑148 (MQ=255) gggg‑aATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGa < 5:49127/149‑1 (MQ=255) ggg‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAg < 2:22696/149‑1 (MQ=255) | CCTTCTGCAGGTCGAAACGCAGCATCGCGCCC‑GGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGTT > NC_002947/5867585‑5867881 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |