| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,433:1 | +T | 7.7% | intergenic (‑51/+38) | trmE ← / ← oxaA | GTPase/membrane protein insertase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,433 | 1 | . | T | 7.7% | 348.6 / 21.0 | 91 | intergenic (‑51/+38) | trmE/oxaA | GTPase/membrane protein insertase |
| Reads supporting (aligned to +/- strand): ref base . (35/49); new base T (5/2); total (40/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.46e-01 | |||||||||||
CTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCGG > NC_002947/6287‑6574 | cTTGGCAGCCAGAGGGCCGGACAACCTGAC‑ATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAg‑ggg > 8:266890/1‑149 (MQ=255) ggCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGc > 5:178713/1‑149 (MQ=255) ggCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTAAG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACGAg‑ggggg > 8:348659/1‑148 (MQ=255) aGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑tt > 8:226157/1‑149 (MQ=255) ccAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑tttt < 7:209605/149‑1 (MQ=255) ccAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCC‑CTAGTGGGGCG‑tttt < 6:316892/149‑1 (MQ=255) cAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑ttttt < 5:125251/149‑1 (MQ=255) gagGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTa < 6:84587/149‑1 (MQ=255) gagGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTa > 7:109553/1‑149 (MQ=255) gagGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTa < 6:46067/149‑1 (MQ=255) gagGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTa < 7:46721/149‑1 (MQ=255) cGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTcaca < 7:280350/149‑1 (MQ=255) gACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATAGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAgg < 6:6681/149‑1 (MQ=255) aCAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCAACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GCGGCG‑TTTTTTATTCACAGGc > 3:119584/1‑149 (MQ=255) cAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑ttttt < 1:325452/137‑1 (MQ=255) ccTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAACACGACAGATAGCACAAACGCCCCACTAG‑GGGGCG‑TGTTTTATTACCAGGCTAGc > 2:290469/1‑149 (MQ=255) ccTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGc > 3:47450/1‑149 (MQ=255) ccTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGc < 3:15233/149‑1 (MQ=255) gACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTa > 3:248352/1‑149 (MQ=255) cAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTTATTCACAGGCTAGCGTa < 8:129526/148‑1 (MQ=255) cAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTAt < 2:204801/148‑1 (MQ=255) aaTTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTAt > 3:274904/1‑147 (MQ=255) aaTTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTa < 6:209929/149‑1 (MQ=255) aTTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAg < 7:266890/149‑1 (MQ=255) ttCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGc > 3:147566/1‑149 (MQ=255) cccACACCGCCCCGGCCCTTGGCCGTGGCGATTGCGGCGCTGGTTTCACGCCCAGTTTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAACACTACAGATAGCAAAACCGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGccc < 2:171336/149‑1 (MQ=255) ccACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGccc < 8:109553/148‑1 (MQ=255) cacaCCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGt > 8:82255/1‑149 (MQ=255) ccatcGCCACGGCCCAGGGCCGGGGCGGTGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGt > 3:268713/5‑148 (MQ=255) acacCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTc < 2:310167/149‑1 (MQ=255) cacCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGCTTACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCg < 1:115959/149‑1 (MQ=255) ccGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAag > 8:333938/1‑149 (MQ=255) gCCCCGGCCCTGGGCCGGGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAag > 5:74243/1‑147 (MQ=255) gCCACGGCCCAGGGCCGGGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagc > 2:260522/1‑148 (MQ=255) gCCACGGCCCAGGGCCGGGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTAAG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAGTGGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagc < 1:260522/149‑1 (MQ=255) cGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagcagcag > 6:16589/1‑149 (MQ=255) cTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCtttt < 4:147566/149‑1 (MQ=255) cgggCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCttttt < 8:164425/148‑1 (MQ=255) gggggTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGCCAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTg > 7:46073/5‑149 (MQ=255) ggCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTg < 8:145904/149‑1 (MQ=255) ccGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTgg > 4:203128/1‑148 (MQ=255) cGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAgctgc < 4:211974/149‑1 (MQ=255) cggcgATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGAt < 7:348659/149‑1 (MQ=255) cgATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACg < 4:268713/149‑1 (MQ=255) gATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACgg < 7:333938/149‑1 (MQ=255) tttCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGt > 7:11053/1‑149 (MQ=255) tCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCaa > 7:117200/1‑109 (MQ=255) tCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCaa < 8:117200/109‑1 (MQ=255) aCGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGAt < 7:226157/148‑1 (MQ=255) aCGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATg > 7:326634/1‑149 (MQ=255) cGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGt < 4:274904/149‑1 (MQ=255) caGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTAATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTAcc > 1:292956/1‑148 (MQ=255) gtTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCAccgc > 1:134697/1‑149 (MQ=255) tCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGc > 1:173937/1‑89 (MQ=255) tCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGc < 2:173937/89‑1 (MQ=255) tCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCActgctg > 2:14603/1‑149 (MQ=255) aTGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCg < 5:16589/149‑1 (MQ=255) tGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGa < 2:320588/149‑1 (MQ=255) cTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGaaa < 4:248352/149‑1 (MQ=255) tCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAAt > 8:341091/1‑149 (MQ=255) cGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGa < 5:192422/129‑1 (MQ=255) cGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGa > 6:192422/1‑129 (MQ=255) aaGCCTCTACG‑‑‑ACAAAAACGAAAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGAc < 8:156320/149‑1 (MQ=255) aGCCTCTACG‑‑‑TCAAATACGAAAGATATCAAAATCGGCCCTCTAG‑TGGTCG‑TTTTTTATTCACAGGCTAGCTTATTAGCCCGTCATGCTGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAATTCGACa < 5:187129/149‑1 (MQ=255) gCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAg < 7:82255/149‑1 (MQ=255) ctctACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCAAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTAGGTAGCTTCTTAGATAGGGCGAGTGATGTACAACTGCTGCGAAATCGACAgg > 4:354441/1‑148 (MQ=255) ctctACG‑‑‑ACAAAAACGACACATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGc < 6:178713/149‑1 (MQ=255) tACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACGGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAgt > 3:73723/1‑149 (MQ=255) cG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTNCCACTGCTGCGAAATCGACAGGCAgttg < 1:213798/149‑1 (MQ=255) cG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAgttg < 3:203128/149‑1 (MQ=255) g‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGCCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTATTTAGGTAGCTGCTTCGATACGGCGAGTGATGTACCAATGCTGCGAAAAGGACAGGAAgtttt > 5:319551/1‑147 (MQ=255) cAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTc < 5:193751/149‑1 (MQ=255) aaaaaCGACAGATAGCAAACACGCCCCAGTAG‑TGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTca < 7:141021/149‑1 (MQ=255) aaaaaCGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTca < 4:47450/149‑1 (MQ=255) aaaCGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAgt > 7:227974/1‑141 (MQ=255) aaaCGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAgt < 8:227974/141‑1 (MQ=255) aCGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAAc > 3:149474/1‑149 (MQ=255) cAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAg < 1:206008/149‑1 (MQ=255) cAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAg > 3:304515/1‑149 (MQ=255) aGATAGCATAAACGCCCCTCTAG‑GTGGCG‑TTTTTTATTCACAGGCTAGCGTTTTAGCCCGTCAAGCAGCAGCTTTTTTGGTTTCTGCTTCGATACGGCGAGTGATGTTCCACTGGTGCGAAATCTAGAGGCTGTTGTTCACAACCCAg < 4:119584/148‑1 (MQ=255) aTAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTAc < 8:183430/149‑1 (MQ=255) ataaaaaaCGCCCC‑CTAGTGGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCGTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCGGCGAAATCGACAGGCAGTTGTTCCCTACCCAGTACAg > 7:165400/4‑149 (MQ=255) ataaaaaaCGCCCC‑CTAGTGGGGCG‑GTTTTTATTGACAGGGTAGCGTATTAGCCGGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCGGCGAATTCGACAGGCAGTTGTTCACAACCCAGTCCAg > 7:132869/4‑149 (MQ=255) aaaaaaCGCCCC‑CTAGTGGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCa > 6:189352/2‑149 (MQ=255) aaaaaCGCCCC‑CTAGTGGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCAc > 4:33657/1‑149 (MQ=255) aaaaCGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAgttgtt < 1:207047/130‑1 (MQ=255) aaaaCGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAgttgtt > 2:207047/1‑130 (MQ=255) aaaCGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTg < 8:265695/70‑1 (MQ=255) aaaCGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTg > 7:265695/1‑70 (MQ=255) aaaCGCCCC‑CTAGTGGGGCG‑TTTTTTTTTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCAc > 5:249353/1‑147 (MQ=255) gCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGAcc > 3:332223/1‑149 (MQ=255) ccccACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCg < 1:14603/149‑1 (MQ=255) cccACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCgg < 8:326634/149‑1 (MQ=255) | CTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACG‑‑‑ACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCG‑TTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCGG > NC_002947/6287‑6574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |