| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,218,661:1 | +C | 8.8% | intergenic (+44/+39) | oprJ → / ← nfxB | outer membrane protein OprJ/HTH‑type transcriptional regulator NfxB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,218,661 | 1 | . | C | 8.8% | 256.5 / 17.7 | 68 | intergenic (+44/+39) | oprJ/nfxB | outer membrane protein OprJ/HTH‑type transcriptional regulator NfxB |
| Reads supporting (aligned to +/- strand): ref base . (29/33); new base C (4/2); total (33/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.42e-01 | |||||||||||
TACGTGAACGAAGCAGCCTTCATCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATCGACGATGCCGTACACC > NC_002947/3218516‑3218808 | tACGTGAACGAAGCAGCCTTCATCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATc > 6:292514/1‑149 (MQ=255) gAACGAAGCAGCCTTCATCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGc > 5:339000/1‑149 (MQ=255) aCGAAGCAGCCTTCATCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGccc > 6:78125/1‑149 (MQ=255) aaGCAGCCTTCATCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTgg < 8:258817/149‑1 (MQ=255) aaGCAGCCTTCATCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTgg < 1:300175/149‑1 (MQ=255) gcagcCTTCATCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTgggg > 2:115702/1‑149 (MQ=255) gcCTTCATCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACATCCTCCTTTGGTTTGCTTGTCCAGCCACTTGGGCGGTGGG‑ATCGATGCCCTGGGGttt < 6:166857/149‑1 (MQ=255) gcCTTCATCGAAGCCAGAACCCAGCGACAACTGGCGTAGGTCAACCTGTTCCGCGCACTCGGCGGCGCCTCCCCGAGCAACGGCTGAAACAGCCTCCATTGGTTGGCTTGTCCAGCCACTTGCCCCCAGGG‑ATCGAAGCCCTgggctat > 1:178628/1‑145 (MQ=255) cTTCATCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGttttt < 5:351298/149‑1 (MQ=255) tCATCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGGCATCGAT‑CCCTggg < 5:313750/141‑1 (MQ=255) tCATCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGGCATCGAT‑CCCTggg > 6:313750/1‑141 (MQ=255) aTCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTgg < 5:368793/149‑1 (MQ=255) aTCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTgg > 2:239127/1‑149 (MQ=255) tCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGGCATCGAT‑CCCTggg < 1:357573/138‑1 (MQ=255) tCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGGCATCGAT‑CCCTggg > 2:357573/1‑138 (MQ=255) gAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGTTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTg < 1:115702/149‑1 (MQ=255) gAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTg > 2:138905/1‑149 (MQ=255) ccAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTg > 4:225849/1‑148 (MQ=255) cAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGaa < 5:292514/149‑1 (MQ=255) ccAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAgg > 3:141904/1‑149 (MQ=255) gACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCagc < 4:141904/149‑1 (MQ=255) cAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCagcga < 4:92254/149‑1 (MQ=255) aaCTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCagcgag > 7:91702/1‑149 (MQ=255) gCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCgg < 6:304029/147‑1 (MQ=255) gTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGc > 2:111499/1‑149 (MQ=255) ggTCAACCGGTTCCGCGCACTCGGCTGCGGCTGGCCGAGCACGGGCTGAAACAGCCTCCGTTGGTTGGCTTGTCCAGCCACGTGGCCCCAGGG‑ATCGATGCCCTGGGGATTTTTTGGGTGGTGAAGG‑CAGGTCAGCGACCGGGTGgcgc > 6:202011/1‑149 (MQ=255) aaCCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCgcagca > 1:42634/1‑149 (MQ=255) cTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTgg > 2:126909/1‑99 (MQ=255) cTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTgg < 1:126909/99‑1 (MQ=255) cTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCg > 1:364621/1‑149 (MQ=255) ccGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGa < 6:351827/148‑1 (MQ=255) cgcgCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAg < 1:239127/149‑1 (MQ=255) gcACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAg < 5:143082/145‑1 (MQ=255) gcACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAg > 6:143082/1‑145 (MQ=255) cTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAagc < 2:364621/149‑1 (MQ=255) ggcggcggcTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAagca < 3:225849/147‑1 (MQ=255) gcggcTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCa < 5:137941/149‑1 (MQ=255) ggCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGttt < 2:176017/149‑1 (MQ=255) gCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTg > 1:364780/1‑149 (MQ=255) gCCGAGCAAGGGCTG‑AACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTg < 6:199050/111‑1 (MQ=255) gCCGAGCAAGGGCTG‑AACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTg > 5:199050/1‑111 (MQ=255) cGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCa > 5:153032/1‑149 (MQ=255) aaGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCATGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACAGAc < 6:339000/149‑1 (MQ=255) aaGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGAc < 8:91702/149‑1 (MQ=255) aaGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGAc < 1:138905/149‑1 (MQ=255) ggCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTc < 5:78220/149‑1 (MQ=255) tGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTcgcg > 7:331166/1‑149 (MQ=255) aaaCAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCg > 1:139675/1‑100 (MQ=255) aaaCAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCg < 2:139675/100‑1 (MQ=255) aaaCAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTcgcg < 7:107285/147‑1 (MQ=255) aaCAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTg > 6:362046/1‑149 (MQ=255) aaCAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTg > 2:308565/1‑149 (MQ=255) aGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGTCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTc > 5:104397/1‑140 (MQ=255) aGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGTCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTc < 6:104397/140‑1 (MQ=255) gCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGcgtcgt > 5:176651/1‑149 (MQ=255) ttGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTc > 3:126057/1‑149 (MQ=255) cAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCAt > 2:300358/1‑149 (MQ=255) cACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATcgac < 5:251209/149‑1 (MQ=255) ggCCCCAGGG‑ATCTTTGCCCTGGGGTTTTTTTGGCTGGTTAAGG‑CAGGGCAGCTAGCGGGTGCCGCAGCACCGTGGAGTATCTAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATcgacga < 1:111499/147‑1 (MQ=255) ggCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATCGACGAt < 3:196949/147‑1 (MQ=255) ggCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATCGACGAt < 1:203555/147‑1 (MQ=255) gCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATCGACGATGc < 6:153032/148‑1 (MQ=255) ccccAGGGCATCGAT‑CCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATCGACGATGCCg > 6:237121/1‑149 (MQ=255) cccAGGGCATCGAT‑CCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATCGACGATGCCg > 2:51950/1‑148 (MQ=255) cccAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATCGACGATg > 6:384287/1‑145 (MQ=255) cccAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATCGACGATg < 5:384287/145‑1 (MQ=255) aGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATCGACGATGCCGTaca > 4:38425/1‑149 (MQ=255) aGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATCGACGATGCCGTaca < 5:78125/149‑1 (MQ=255) gg‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTGAGCGAGCGGGTGCCGCAGCACGGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGGATCGACGATGCCGTACAcc < 2:178628/149‑1 (MQ=255) gg‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATCGACGATGCCGTACAcc < 5:362046/149‑1 (MQ=255) gg‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGACCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATCGACGATGCCGTACAcc < 1:308565/149‑1 (MQ=255) | TACGTGAACGAAGCAGCCTTCATCGAAGCCAGTACCCAGCGACAACTGGCGTTGGTCAACCTGTTCCGCGCACTCGGCGGCGGCTGGCCGAGCAAGGGCTGAAACAGCCTCCTTTGGTTGGCTTGTCCAGCCACTTGGCCCCAGGG‑ATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGG‑CAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGA‑AAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCGTTCGGCATCGACGATGCCGTACACC > NC_002947/3218516‑3218808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |