| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 278,742:1 | +A | 85.7% | intergenic (‑237/+77) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 85.7% | 139.2 / 18.4 | 49 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (4/3); new base A (22/20); total (26/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCG > NC_002947/278595‑278883 | aTGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑t < 6:116206/148‑1 (MQ=255) cGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑aaac < 2:276647/148‑3 (MQ=255) cAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAT‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTc > 6:370875/1‑149 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTac < 1:151969/147‑1 (MQ=255) cgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACAt < 3:323050/149‑1 (MQ=255) gACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAAC‑TTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGc > 1:239370/1‑149 (MQ=255) cGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCaa < 3:348237/149‑1 (MQ=255) cGTGCGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCaa < 2:63222/149‑1 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgtg > 3:98389/1‑148 (MQ=255) tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGGACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCa < 4:188625/149‑1 (MQ=255) tggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 1:259780/149‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAg > 3:312921/1‑148 (MQ=255) cggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTT‑AA‑CCCGCGGCGACACACATTCCTGCAGATGGGTGCACTGTAGGAGc > 4:28311/1‑149 (MQ=255) cggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTT‑AA‑ACCGCAGCTAAACACAAGCCTAAAGATATGTGCACTGTAGGAGc > 4:9888/1‑149 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg < 6:141866/149‑1 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGACTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg < 3:359531/149‑1 (MQ=255) tatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGt < 5:370875/148‑1 (MQ=255) tatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGt < 7:94667/148‑1 (MQ=255) atataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATACAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGttt < 7:316598/149‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTa > 4:249467/1‑149 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcgc > 3:157330/1‑149 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcgc < 4:98389/149‑1 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCGACCCACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACgcgc > 4:276524/1‑149 (MQ=255) aTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGaaa < 5:11027/149‑1 (MQ=255) taAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCATCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCgg > 7:215823/1‑148 (MQ=255) aaaTTTTTATGAACTAAC‑TTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACa < 2:239370/149‑1 (MQ=255) tttttATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAgg > 1:83913/1‑149 (MQ=255) attaacaaattTTTTTTAATTTTTATAGAC‑GGGGTTTTTGTTACAGCGGTCCCGGGCTCTGCGCGGC‑A‑AACCCCGCTCCAACACACATGCCTCAATCTCTGTGCCCTGTCGTCGCGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTa < 4:197318/145‑1 (MQ=255) ctaactTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 8:215823/149‑1 (MQ=255) taactTTTTGGAATATTTATAGAAGGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGACTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCg > 1:22804/1‑147 (MQ=39) ctTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGcc > 2:95077/1‑149 (MQ=255) atatTAATAGAC‑GGGGTATTTGTAACCGCGGGGCGGGGCTCTGCGCGGG‑A‑AACCCCGCTCCTACACACAGGCCTCAAGATCTGTCCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTccc < 3:28311/148‑1 (MQ=37) atTAATCGAC‑GGGGGATTTGTTACCGAGGGGCCGGGCTCTTCGCGGG‑T‑AACCCCGCTCCAACCCACCTCCCTCAAGATCTGTGCACTGTAGCCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAg < 3:249467/149‑1 (MQ=37) tataGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTT‑AA‑CCCGCTCCTACACACATGCCTCAAGGTCTGTGCACTGTTGGTGCGGGTTTAGCCGCGCAAGGGCCGGAACAGGTTTTCTCGGAGGGCGCAGGCCCGAggta > 5:225969/1‑147 (MQ=255) ataGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAAc > 7:98910/1‑149 (MQ=255) aa‑GGGGGAGTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑ACCGATCCGACACCCAGGACGCAAGATCTGTGCCCTTGAGGAGCGGGGTTACCAGCGACAGGGCCGGAACCGGTGTACGCGGCGGCAGCCGGACCGAggcaagggc > 8:74850/1‑142 (MQ=255) gggggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATATGTGCACTGTAGGATCGTGTTTACCCGGGTAAGGGCCGGATCAGGTTTTCTAGGAGGCCGCAGTCACGAGGAACTTtcg > 5:349211/1‑148 (MQ=255) ggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcgc > 2:48454/1‑146 (MQ=255) ggATCTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCCCTCCTACACACAAGCCTCAAGATGTGTGCACTGTAGGAGCGGGGTTACCCGCGAAAGGGCCGGAACAGGTTTACTAGGAGGCCGCACTACCGAGGAACTTtcgc > 8:41262/1‑146 (MQ=255) gATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAg > 5:148177/1‑148 (MQ=255) tttGTTACAGAGGTGCCGGGCTCTTCGCGGGTT‑AA‑ACCCCTCCGACACACATGCCTCAAGGTCTGTGGACTGTAGGCGCGGGTTTTCCCGCGAAAGGGCCGGGACAGGTTTAATCGGAGGCCGCAGTACCGAGGGACTTGCGCAAGAAc > 6:24312/1‑149 (MQ=255) gTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGc > 3:289365/1‑149 (MQ=255) ttACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGcc < 4:312921/149‑1 (MQ=255) aCAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACCTGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc > 7:195521/1‑149 (MQ=255) cAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc < 1:95077/148‑1 (MQ=255) agGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc < 6:269782/145‑1 (MQ=255) agGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc > 5:269782/1‑145 (MQ=255) gTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGc > 8:181667/1‑149 (MQ=255) ctctTCGCGGG‑TAAA‑CCCGCTCCAACACACTTCCCTCAAGATCTGTGCACTGTCGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttcctt < 3:276524/149‑1 (MQ=39) cgcgGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGgcg > 6:362304/1‑149 (MQ=255) cgcgGG‑TAAA‑CCCGCTCATACACACATCCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCg < 5:5775/146‑1 (MQ=255) | ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAA‑GGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCG > NC_002947/278595‑278883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |