Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,587,622:1 +A 7.0% coding (458/915 nt) catA‑II → catechol 1,2‑dioxygenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,587,6221.A 7.0% 223.1 / 10.6 57coding (458/915 nt)catA‑IIcatechol 1,2‑dioxygenase
Reads supporting (aligned to +/- strand):  ref base . (26/27);  new base A (2/2);  total (28/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01

ACCATCGAAGGCCCGTTGTACGTGGCTGGCGCACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACCGCGCGCGCTCCATCGTGCCATCGGGCTATGGCTGC  >  NC_002947/3587474‑3587767
                                                                                                                                                     |                                                                                                                                                 
aCCATCGAAGGCCCGTTGTACGTGGCTGGCGCACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGACAGGTGCTGGCCCCGCACGGACGCCCGCTGCCGGGTGCCAc                                                                                                                                                    >  3:286139/1‑149 (MQ=255)
         ggCCCGTTGTACGTGGCTGGCGCACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCTGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCt                                                                                                                                          >  4:88812/1‑149 (MQ=255)
          gCCCGTTGTACGTGGCTGGCGCACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCTGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCtg                                                                                                                                         <  3:88812/149‑1 (MQ=255)
          gCCCGTTGTACGTGGCTGGCGCACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACAGGTCGAccg                                                                                                                                          >  2:291943/1‑148 (MQ=255)
          gCCCGTTGTACGTGGCTGGCGCACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCtg                                                                                                                                         >  2:202486/1‑149 (MQ=255)
           cccGTTGTACGTGGCTGGCGCACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCtgt                                                                                                                                        <  4:371485/149‑1 (MQ=255)
              gTTGTACGTGGCTGGCGCACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTgg                                                                                                                                      >  4:69781/1‑148 (MQ=255)
              gTTGTACGTGGCTGGCGCACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGc                                                                                                                                     <  2:230549/149‑1 (MQ=255)
              gTTGTACGTGGCTGGCGCACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGc                                                                                                                                     <  5:167072/149‑1 (MQ=255)
                 gTACGTGGCTGGCGCACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACAGGTCGACCGTGGCac                                                                                                                                   <  1:291943/148‑2 (MQ=255)
                  tACGTGGCTGGCGCACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGTCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATg                                                                                                                                  <  2:120578/148‑1 (MQ=255)
                            gcgcACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACAGGTCGACCGTGGCacc                                                                                                                                  <  5:93852/138‑3 (MQ=255)
                            gcgcACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACAGGTCGACCGTGGCacc                                                                                                                                  >  6:93852/1‑136 (MQ=255)
                            gcgcACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGt                                                                                                                       <  3:69781/149‑1 (MQ=255)
                              gcACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCAGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTgg                                                                                                                     >  8:121661/1‑149 (MQ=255)
                                  cGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTAcc                                                                                                                 >  1:29888/1‑149 (MQ=255)
                                        cccAAGGTGAAGTGCGCATGGACGACGGCAGCGAAGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCg                                                                                                           >  8:46781/1‑149 (MQ=255)
                                          cAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTg                                                                                                                      >  7:322829/1‑136 (MQ=255)
                                          cAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTg                                                                                                                      <  8:322829/136‑1 (MQ=255)
                                            aGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGttct                                                                                                       <  4:26887/149‑1 (MQ=255)
                                                 aaGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGa                                                                                                   <  1:202486/148‑1 (MQ=255)
                                                      cgcATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCaaa                                                                                              <  7:338141/148‑1 (MQ=255)
                                                      cgcATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCaaa                                                                                              <  2:29888/148‑1 (MQ=255)
                                                       gcATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGc                                                                                            >  7:139695/1‑149 (MQ=255)
                                                          tGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAg                                                                                         >  8:229351/1‑149 (MQ=255)
                                                                acgGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCg                                                                                   <  1:226031/149‑1 (MQ=255)
                                                                     aGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACaa                                                                              >  8:346959/1‑149 (MQ=255)
                                                                     aGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACaa                                                                              <  7:229351/149‑1 (MQ=255)
                                                                         aggaggGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTg                                                                          >  5:145408/1‑149 (MQ=255)
                                                                         aggaggGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTg                                                                          >  5:365780/1‑149 (MQ=255)
                                                                              ggCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTa                                                                                 >  4:33834/1‑137 (MQ=255)
                                                                              ggCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTa                                                                                 <  3:33834/137‑1 (MQ=255)
                                                                              ggCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCg                                                                     >  2:241467/1‑149 (MQ=255)
                                                                              ggCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCg                                                                     <  4:73413/149‑1 (MQ=255)
                                                                                cGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCGGTCGGCGTACAACCTGCGTCGgc                                                                   <  8:139695/149‑1 (MQ=255)
                                                                                cGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGgc                                                                   <  7:149590/149‑1 (MQ=255)
                                                                                    gCCACGGCGATGATCCTGGACGGCGAGGTGCTGGACCCGCACGGACGCCGGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAACGCCAGTCGGCGTACACCCTGCGTCGGCGCa                                                                <  6:21084/148‑1 (MQ=255)
                                                                                       aCGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCaaa                                                                                              >  7:219410/1‑115 (MQ=255)
                                                                                       aCGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCaaa                                                                                              <  8:219410/115‑1 (MQ=255)
                                                                                               gTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATg                                                    >  5:133888/1‑149 (MQ=255)
                                                                                                   cTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGGTAACGATGcac                                                 <  8:23539/148‑3 (MQ=255)
                                                                                                   cTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGGTAACGATGcac                                                 >  7:23539/1‑146 (MQ=255)
                                                                                                    tGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAg                                               >  5:236719/1‑149 (MQ=255)
                                                                                                            cAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGc                                                                         >  3:334318/1‑115 (MQ=255)
                                                                                                            cAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGc                                                                         <  4:334318/115‑1 (MQ=255)
                                                                                                                 gCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACcgcg                                  <  7:346959/149‑1 (MQ=255)
                                                                                                                  cTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACcgcgc                                 <  6:365780/149‑1 (MQ=255)
                                                                                                                  cTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACcgcgc                                 <  6:236719/149‑1 (MQ=255)
                                                                                                                  cTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACcgcgc                                 >  2:74939/1‑149 (MQ=255)
                                                                                                                       cccGCACGGACGCCCGCTGCCGGGTGCCACTGTCGACCTGTGTCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACCGCGCGCGCt                            <  4:286139/149‑1 (MQ=255)
                                                                                                                        ccGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACCGCGCGCGCTc                           >  8:173116/1‑149 (MQ=255)
                                                                                                                            aCGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGCTGCCCAGGGGCGCTACCGCGCGCGCTCCATc                       >  8:222325/1‑149 (MQ=255)
                                                                                                                            aCGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACCGCGCGCGCTCCATc                       >  4:29044/1‑149 (MQ=255)
                                                                                                                                aCGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACCGCGCGCGCTCCATCGTGc                   >  1:322151/1‑149 (MQ=255)
                                                                                                                                    ccGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACCGCGCGCGCTCCATCGTGCCATc               >  3:71993/1‑149 (MQ=255)
                                                                                                                                     cGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACCGCGCGCGCTCCATCGTGCCATCg              >  1:78463/1‑149 (MQ=255)
                                                                                                                                      gCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACCGCGCGCGCTCCATCGTGCCATCgg             <  7:121661/149‑1 (MQ=255)
                                                                                                                                                 ccACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACCGCGCGCGCTCCATCGTGCCATCGGGCTATGGCTGc  <  7:173116/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                 
ACCATCGAAGGCCCGTTGTACGTGGCTGGCGCACCGATTGCCCAAGGTGAAGTGCGCATGGACGACGGCAGCGAGGAGGGCGTGGCCACGGTGATGTTCCTGGAAGGCCAGGTGCTGGACCCGCACGGACGCCCGCTGCCGGGTGCCACGGTCGACCTGTGGCATGCCAATACCCGTGGTACCTACTCGTTCTTCGACCAAAGCCAGTCGGCGTACAACCTGCGTCGGCGCATCGTTACCGATGCCCAGGGGCGCTACCGCGCGCGCTCCATCGTGCCATCGGGCTATGGCTGC  >  NC_002947/3587474‑3587767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: