New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 48558	68 (1.130)	4 (0.070)	4/254	NT	5.7%	coding (817/3162 nt)	czcA‑I	cation efflux system protein
	?	NC_002947	= 48586	68 (1.180)					coding (789/3162 nt)	czcA‑I	cation efflux system protein

CGCCCTTTGGCAGGGTGCGGTTGATGTCCGCCAATTTGGCGGCGACAGCTTGAGATACGGTGCGGCTGTTTTCACCAATCAGCATGAACACGGTACCGAGCACGACTTCGCGGCCGTTCTCAGTAGCAGCACCTGTACGGAGCTCTTTACCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/48405‑48558 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgatTCGCATCAGCAGCGTTGCTGACGTCAGCATCGGTAAAGAGCTCCGTACAGGTGCTGCTACTGAGAACGGCCGCGAAGTCGTGCTCGGTACCGTGTTCATGCTGATTGGTGAAAACAGCCGCACCGTATCTCAAGCTGTCGCCGC  <  NC_002947/48586‑48443                                                                                                                                                                                                                                                                                                            CGCCCTTTGGCAGGGTGCGGTTGATGTCCGCCAATTTGGCGGCGACAGCTTGAGATACGGTGCGGCTGTTTTCACCAATCAGCATGAACACGGTACCGAGCACGACTTCGCGGCCGTTCTCAGTAGCAGCACCTGTACGGAGCTCTTTA                                                                                                                                                       <  1:236100/149‑1     CTTTGGCAGGGTGCTGTTGATGTCCGCCAATTTGGCGGCGACAGCGTGAGATACGTTGCGGCTGTTTTCACCAATCAGCATGAACACGGTACCGAGCACGACTTCGCGGCCGTTCTCAGTAGCATCACCTGTACGGAGCTCTTTACCGA                                                                                                                                                   <  6:365470/149‑1                                              CAGCTTGAGATACGGTGCGGCTGTTTTCACCAATCAGCATGAACACGGTACCGAGCACGACTTCGCGGCCGTTCTCAGTAGCAGCACCTGTACGGAGCTCTTTACCGATTCGCATCAGCAGCGTTGCTGACGTCAGCATCGGTAAAGAG                                                                                                          <  3:93431/149‑1                                              CAGCTTGAGATACGGTGCGGCTGTTTTCACCAATCAGCATGAACACGGTACCGAGCACGACTTCGCGGCCGTTCTCAGTAGCAGCACCTGTACGGAGCTCTTTACCGATTCGCATCAGCAGCGTTGCTGACGTCAGCATCGGTAAAGAG                                                                                                          >  4:93431/1‑149                                                  TTGAGATACGGTGCGGCTGTTTTCACCAATCAGCATGAACACGGTACCGAGCACGACTTCGCGGCCGTTCTCAGTAGCAGCACCTGTACGGAGCTCTTTACCGATTCGCATCAGCAGCGTTGCTGACGTCAGCATCGGTAAAGA                                                                                                           >  5:122859/1‑144                                                  TTGAGATACGGTGCGGCTGTTTTCACCAATCAGCATGAACACGGTACCGAGCACGACTTCGCGGCCGTTCTCAGTAGCAGCACCTGTACGGAGCTCTTTACCGATTCGCATCAGCAGCGTTGCTGACGTCAGCATCGGTAAAGA                                                                                                           <  6:122859/144‑1                                                       ATACGGTGCGGCTGTTTTCACCAATCAGCATGAACACGGTACCGAGCACGACTTCGCGGCCGTTCTCAGTAGCAGCACCTGTACGGAGCTCTTTACCG                                                                                                                                                    <  6:204288/98‑1                                                       ATACGGTGCGGCTGTTTTCACCAATCAGCATGAACAAGGTACCGAGCACGACTTCGCGGCCGTTCTCAGTAGCAGCACCTGTACGGAGCTCTTTACCG                                                                                                                                                    >  5:204288/1‑98                                                                                                                                                       CGATTCGCATCAGCAGCGTTGCTGACGTCAGCATCGGTAAAGAGCTCCGTACAGGTGCTGCTACTGAGAACGGCCGCGAAGTCGTGCTCGGTACCGTGTTCATGCTGATTGGTGAAAACAGCCGCACCGTATCTCAAGCTGTCGCCGC  >  2:307469/1‑148                                                                                                                                                       CGATTCGCATCAGCAGCGTTGCTGACGTCAGCATCGGTAAAGAGCTCCGTACAGGTGCTGCTACTGAGAACGGCCGCGAAGTCGTGCTCGGTACCGTGTTCATGCTGATTGGTGAAAACAGCCGCACCGTATCTCAAGCTGTCGCCGC  >  6:49381/1‑148                                                                                                                                                                                                                                                                                                            CGCCCTTTGGCAGGGTGCGGTTGATGTCCGCCAATTTGGCGGCGACAGCTTGAGATACGGTGCGGCTGTTTTCACCAATCAGCATGAACACGGTACCGAGCACGACTTCGCGGCCGTTCTCAGTAGCAGCACCTGTACGGAGCTCTTTACCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/48405‑48558 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgatTCGCATCAGCAGCGTTGCTGACGTCAGCATCGGTAAAGAGCTCCGTACAGGTGCTGCTACTGAGAACGGCCGCGAAGTCGTGCTCGGTACCGTGTTCATGCTGATTGGTGAAAACAGCCGCACCGTATCTCAAGCTGTCGCCGC  <  NC_002947/48586‑48443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.