New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	297628 =	65 (1.080)	3 (0.050)	3/256	NT	5.1%	coding (376/1578 nt)	gshA	glutamate‑‑cysteine ligase
	?	NC_002947	297694 =	48 (0.830)					coding (310/1578 nt)	gshA	glutamate‑‑cysteine ligase

CCCGGCCAAGGTGCTCGAAAGCCTCGAAGAGACCCACCGTTTCGTCTACAGCAAGCTGGGCGACGAATACCTGTGGAGCCCGTCGATGCCGTGCACGCTGCCGGCCGAGGAGGATATCCCGATCGCCGAGTACGGCAGCTCGAACATCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/297779‑297628 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaTCGACGGGCTCCACAGGTATTCGTCGCCCAGCTTGCTGTAGACGAAACGGTGGGTCTCTTCGAGGCTTTCGAGCACCTTGGCCGGGTCGGCCAGCGCTGGGGTGATGAACTCCAGCAGCGACTCGGAATAATCGGTGGTGATCTGCTC  >  NC_002947/297694‑297841                                                                                                                                                                                                                                                                                                              CCCGGCCAAGGTGCTCGAAAGCCTCGAAGAGACCCACCGTTTCGTCTACAGCAAGCTGGGCAACGAATACCTGTGGAGCCCGTCGATGCCGTGCACGCTGCCGGCCGAGGAGGATATCCCGATCGCCGAGTACGGCAGCTCGAACATCG                                                                                                                                                         <  2:306069/149‑1  CCGGCCAAGGTGCTCGAAAGCCTCGAAGAGACCCACCGTTTCGTCTACAGCAAGCTGGGCGACGAATACCTGTGGAGCCCGTCGATGCCGTGCACGCTGCCGGCCGAGGAGGATATCCCGATCGCCGAGTACGGCAGCTCGAACATCGG                                                                                                                                                        >  7:284742/1‑149                                                                               CCCGTCGATGCCGTGCACGCTGCCGGCCGAGGAGGATATCCCGATCGCCGAGTACGGCAGCTCGAACATCG                                                                                                                                                         <  3:30583/71‑1                                                                               CCCGTCGATGCCGTGCACGCTGCCGGCCGAGGAGGATATCCCGATCGCCGAGTACGGCAGCTCGAACATCG                                                                                                                                                         >  4:30583/1‑71                                                                                  GTCGATGCCGTGCACGCTGCCGGCCGAGGAGGATATCCCGATCGCCGAGTACGGCAGCTCGAACATCGGCATCGACGGGCTCCACAGGTATTCGTCGCCCAGCTTGCTGTAGACGTAACGGTGGGTCTCTTCGATGCTTTCGAGCCCCT                                                                        >  8:318107/1‑149                                                                                   TCGATGCCGTGCACGCTGCCGGCCGAGGAGGATATCCCGATCGCCGAGTACGGCAGCTCGAACATCGGCATCGACGGGCTCCACAGGTATTCGTCGCCCAGCTTGCTGTAGACGAAACGGTGGGTCTCTTCGAGGCTTTCGAGCACCTT                                                                       >  4:52184/1‑149                                                                                                                  ATATCCCGATCGCCGAGTACGGCAGCTCGAACATCGGCATCGACGGGCTCCACAGGTATTCGTCGCCCAGCTTGCTGTAGACGAAACGGTGGGTCTCTTCGAGGCTTTCGAGCACCTTGGCCGGGTCGGCCAGCGCTGGGGTGATGAAC                                        <  3:52184/149‑1                                                                                                                                                      GCATCGACGGGCTCCACAGGTATTCGTCGCCCAGCTTGCTGTAGACGAAACGGTGGGTCTCTTCGAGGCTTTCGAGCACCTTGGCCGGGTCGGCCAGCGCTGGGGTGATGAACTCCAGCAGCGACTCGGAATAATCGGTGGTGATCTGC    <  3:266296/149‑1                                                                                                                                                        ATCGACGGGCTCCACAGGTATTCGTCGCCCAGCTTGCTGTAGACGAAACGGTGGGTCTCTTCGAGGCTTTCGAGCACCTTGGCCGGGTCGGCCAGCGCTGGGGTGATGAACTCCAGCAGCGACTCGGAATAATCGGTGGTGATCTGCTC  >  5:81536/1‑149                                                                                                                                                                                                                                                                                                              CCCGGCCAAGGTGCTCGAAAGCCTCGAAGAGACCCACCGTTTCGTCTACAGCAAGCTGGGCGACGAATACCTGTGGAGCCCGTCGATGCCGTGCACGCTGCCGGCCGAGGAGGATATCCCGATCGCCGAGTACGGCAGCTCGAACATCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/297779‑297628 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaTCGACGGGCTCCACAGGTATTCGTCGCCCAGCTTGCTGTAGACGAAACGGTGGGTCTCTTCGAGGCTTTCGAGCACCTTGGCCGGGTCGGCCAGCGCTGGGGTGATGAACTCCAGCAGCGACTCGGAATAATCGGTGGTGATCTGCTC  >  NC_002947/297694‑297841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.