| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 476264 = | 55 (0.910) | 3 (0.050) | 3/250 | NT | 5.3% | coding (556/1026 nt) | tsaD | tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD |
| ? | NC_002947 | 476325 = | 56 (0.990) | coding (617/1026 nt) | tsaD | tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD | |||||
AGGCCACTGAAGCTGAATTCCAGGCCTGGCCGATCGGTCATTGGCCGCGGGAACACGAAGCGCCCAGGCACACCTTGCTCGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/476349‑476264‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggccagGCCTGGAATTCAGCTTCAGTGGCCTCAAGACCTTCGCCCTGAACACCTGGCAGCAATGCAAGAATGCTGGCGACGACAGTGAGCAAACCCGTTGCGACCTGTCCCTGGCATTCCAGCAGGCGGTGGTGGAGACTTTGACCATCAAGTG > NC_002947/476325‑476472 AGGCCACTGAAGCTGAATTACAGGCCTGGCCGATCGGTCATTGGCCGCGGGAACACGAAGCGCCCAGGCACACCTTGCTCGGCCAGGCCTGGAATTCAGCTTCAGTGGCCTCAAGACCTTCGCCCTGAACACCTGGCAGCAATGCAAG > 5:352544/1‑148 CACTGAAGCTGAATTCCAGGCCTGGCCGATCGGTCATTGGCCGCGGGAACACGAAGCGCCCAGGCACACCTTGCTCGGCCAGGCCTGGAATTCAGCTTCAGTGGCCTCAAGACCTTCGCCCTGAACACCTGGCAGCAATGCAAGAATGC < 6:352544/149‑1 CCTGGCCGATCGGTCATTGGCCGCGGGAACACGAAGCGCCCAGGCACACCTTGCTCGGCCAGGCCTGGAATTCAGCTTCAGTGGCCTCAAGACCTTCGCCCTGAACACCTGGCAGCAATGCAAGAATGCTGGCGACGACAGTGAGCAAA > 2:205504/1‑149 GGCCAGGCGTGTAATTCAGCTTCAGTGGCATCAAGACTTTGGCCCTGAACACGTGGCAGCAATGCATGAATGCTGGCGACGACAGTGAGCAAACCCGTTGCTACCTGTCCCTGGCATTCCAGCAGGCGGTGGTGGAGACTTTGACCATC < 4:233958/149‑1 GCCAGGCCTGGAATTCAGCTTCAGTGGCCTCAAGACCTTCGCCCTGAACACCTGGCAGCAATGCAAGAATGCTGGCGACGACAGTGAGCAAACCCGTTGCGACCTGTCCCTGGCATTCCAGCAGGCGGTGGTGGAGACTTTGACCATC > 4:113855/1‑148 GCCAGGCCTGGAATTCAGCTTCAGTGGCCTCAAGACCTTCGCCCTGAACACCTGGCAGCAATGCAAGAATGCTGGCGACGACAGTGAG < 1:351355/88‑1 GCCAGGCCTGGAATTCAGCTTCAGTGGCCTCAAGACCTTCGCCCTGAACACCTGGCAGCAATGCAAGAATGCTGGCGACGACAGTGAG > 2:351355/1‑88 CAGGCCTGGAATTCAGCTTCAGTGGCCTCAAGACCTTCGCCCTGAACACCTGGCAGCAATGCAAGAATGCTGGCGACGACAGTGAGCAAACCCGTTGCGACCTGTCCCTGGCATTCCAGCAGGCGGTGGTGGAGACTTTGACCATCAAG > 8:190510/1‑149 AGGCCTGGAATTCAGCTTCAGTGGCCTCAAGACCTTCGCCCTGAACACCTGGCAGCAATGCAAGAATGCTGGCGACGACAGTGAGCAAACCCGTTGCGACCTGTCCCTGGCATTCCAGCAGGCGGTGGTGGAGACTTTGACCATCAAGT < 8:312473/149‑1 GGCCTGGAATTCAGCTTCAGTGGCCTCAAGACCTTCGCCCTGAACACCTGGCAGCAATGCAAGAATGCTGGCGACGACAGTGAGCAAACCCGTTGCGACCTGTCCCTGGCATTCCAGCAGGCGGTGGTGGAGACTTTGACCATCAAGTG < 6:218964/149‑1 AGGCCACTGAAGCTGAATTCCAGGCCTGGCCGATCGGTCATTGGCCGCGGGAACACGAAGCGCCCAGGCACACCTTGCTCGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/476349‑476264‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggccagGCCTGGAATTCAGCTTCAGTGGCCTCAAGACCTTCGCCCTGAACACCTGGCAGCAATGCAAGAATGCTGGCGACGACAGTGAGCAAACCCGTTGCGACCTGTCCCTGGCATTCCAGCAGGCGGTGGTGGAGACTTTGACCATCAAGTG > NC_002947/476325‑476472 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |