New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1365962 =	70 (1.160)	5 (0.090)	4/252	NT	7.2%	intergenic (‑23/+27)	PP_1190/PP_1191	hypothetical protein/S4 domain‑containing protein
	?	NC_002947	1365982 =	62 (1.090)					intergenic (‑43/+7)	PP_1190/PP_1191	hypothetical protein/S4 domain‑containing protein

CGAGCTATGCGCCTACCTGCGCCTGGAGCTTTTAGGCATGCGACGCATTCGCCTGGGTGGTGTGTCGATGGGCAAGCTGCCCTTGGGCCAATGGCGTTACCTGGCTACCTCCGAACGTTTCTAAGCAATACGCCGCGCTGGAATGCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1366112‑1365962 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcggcGTATTGCTTAGAAACGTTCGGAGGTAGCCAGGTAACGCCATTGGCCCAAGGGCAGCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTC  >  NC_002947/1365982‑1366122                                                                                                                                                                                                                                                                                                      CGAGCTATGCGCCTACCTGCGCCTGGAGCTTTTAGGCATGCGACGCATTCGCCTGGGTGGTGTGTCGATGGGCAAGCTGCCCTTGGGCCAATGGCGTTACCTGGCTACCTCCGAACGTTTCTAAGCAATACGCCGCGCTGGAATGCGCG                                                                                                                                                 <  7:181887/149‑1                                                TTCGCCTGGGTGGTGTGTCGATGGGCAAGCTGCCCTTGGGCCAATGGCGTTACCTGGCTACCTCCGAACGTTTCTAAGCAATACGCCGCGCATTCCAGCGCGGCGTATTGCTTAGAAACGTTCGGAGGTAGCCAGGTAACGCCATTGGC                                                                                                  <  7:227817/149‑1                                                                                                                          TAAGCAATACGCCGCGCTGGAATGCGCGGCGTATTGCTTAGAAACGTTCGGAGGTAGCCAGGTAACGCCATTGGCCCAAGGGCAGCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAG                        >  4:213367/1‑149                                                                                                                          TAAGCAATACGCCGCGCTGGAATGCGCGGCGTATTGCTTAGAAACGTTCGGAGGTAGCCAGGTAACGCCATTGGCCCAAGGGCAGCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAG                        >  4:83004/1‑149                                                                                                                            AGCAATACGCCGCGCTGGAATGCGCGGCGTATTGCTTAGAAACGTTCGGAGGTAGCCAGGTAACGCCATTGGCCCAAGGGCAGCTTGCCCATCGACACACCACC                                                                   <  1:235457/104‑1                                                                                                                            AGCAATACGCCGCGCTGGAATGCGCGGCGTATTGCTTAGAAACGTTCGGAGGTAGCCAGGTAACGCCATTGGCCCAAGGGCAGCTTGCCCATCGACACACCACC                                                                   >  2:235457/1‑104                                                                                                                                                TGCGCGGCGTATTGCTTAGAAACGTTCGGAGGTAGCCAGGTAACGCCATTGGCCCAAGGGCAGCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTC  <  8:227817/149‑1                                                                                                                                                                                                                                                                                                      CGAGCTATGCGCCTACCTGCGCCTGGAGCTTTTAGGCATGCGACGCATTCGCCTGGGTGGTGTGTCGATGGGCAAGCTGCCCTTGGGCCAATGGCGTTACCTGGCTACCTCCGAACGTTTCTAAGCAATACGCCGCGCTGGAATGCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1366112‑1365962 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcggcGTATTGCTTAGAAACGTTCGGAGGTAGCCAGGTAACGCCATTGGCCCAAGGGCAGCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTC  >  NC_002947/1365982‑1366122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.