| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1487892 = | 60 (1.000) | 3 (0.050) | 3/246 | NT | 5.0% | coding (431/1209 nt) | degS | serine endoprotease DegS |
| ? | NC_002947 | 1487979 = | 58 (1.040) | coding (344/1209 nt) | degS | serine endoprotease DegS | |||||
AACAAAAGCGCCCACCCGCTGTTCGAAGACCCGCAGTTCCGCCGCTTCTTCGGCGATAACCTGCCCAAACAGCGCCGCTGGGAATCAAGCCTGGGTTCGGCGGTAATCATGAGCCCAGAGGGCTACCTGCTGACCAACAACCATGTCACCAGCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1488049‑1487892‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcggcgcTGTTTGGGCAGGTTATCGCCGAAGAAGCGGCGGAACTGCGGGTCTTCGAACAGCGGGTGGGCGCTTTTGTTCACCACCTTGGTGGTGTACAGGTTGGCCACCGCCGGGGCGGCCAGGGTCACGGCGTCGGCGTACGACAC > NC_002947/1487979‑1488118 AACAAAAGCGCCCACCCGCTGTTCGAAGACCCGCAGTTCCGCCGCTTCTTCGGCGATAACCTGCCCAAACAGCGCCGCTGGGAATCAAACCTGGGTTCGGCGGTAATCATGAGCCCAGAGGGCTACCTGCTGACCAACAACCATGTCAC > 7:95954/1‑149 ACAAAAGCGCCCACCCGCTGTTCGAAGACCCGCAGTTCCGCCGCTTCTTCGGCGATAACCTGCCCAAACAGCGCCGCTGGGAATCAAGCCTGGGTTCGGCGGTAATCATGAGCCCAGAGGGCTACCTGCTGACCAACAACCATGTCAC < 7:311785/148‑1 CAAAAGCGCCCACCCGCTGTTCGAAGACCCGCAGTTCCGCCGCTTCTTCGGCGATAACCTGCCCAAACAGCGCCGCTGGGAATCAAGCCTGGGTTCGGCGGTAATCATGAGCCCAGAGGGCTACCTGCTGACCAACAACCATGTCAC > 1:291417/1‑147 AAGCGCCCACCCGCTGTTCGAAGACCCGCAGTTCCGCCGCTTCTTCGGCGATAACCTGCCCAAACAGCGCCGCTGGGAATCAAGCCTGGGTTCGGCGGTAATCATGAGCCCAGAGGGCTACCTGCTGACCAACAACCATGTCACCAGCG < 1:157536/149‑1 AGCGCCCACCCGCTGTTCGAAGACCCGCAGTTCCGCCGCTTCTTCGGCGATAACCTGCCCAACCAGCGCCGCTGGGAATCAAGCCTGGGTTCGGCGGTAATCATGAGCCCAGAGGGCTACCTGCTGACCAACAACCATGTCACCAGCGG < 6:270815/149‑1 AGCGCCGCTGGGAATCAAGCCTGGGTTCGGCGGTAATCATGAGCCCAGAGGGCTACCTGCTGACCAACAACCATGTCACCAGCGGCGCTGTTTGGGCAGGTTATCGCCGAAGAAGCGGCGGAACTGCGGGTCTTCGAACAGCGGGTGGG > 8:197801/1‑149 GCCGCTGGGAATCAAGCCTGGGTTCGGCGGTAATCATGAGCCCAGAGGGCTACCTGCTGACCAACAACCATGTCACCAGCGGCGCTGTTTGGGCAGGTTATCGCCGAAGAAGCGGCGGAACTGCGGGTCTTCGAACAGCGGGTGGGCGC > 6:124772/1‑149 GGTAATCATGAGCCCAGAGGGCTACCTGCTGACCAACAACCATGTCACCAGCGGCGCTGTTTGGGCAGGTTATCGCCGAAGAAGCGGCGGAACTGCGGGTCTTCGAACAGCGGGTGGGCGCTTTTGTTCACCACCTTGGTGGTGTACAG < 7:197801/149‑1 CAGCGGCGCTGTTTGGGCAGGTTATCGCCGAAGAAGCGGCGGAACTGCGGGTCTTCGAACAGCGGGTGGGCGCTTTTGTTCACCACCTTGGTGGTGTACAGGTTGGCCACCGCCGGGGCGGCCAGGGTCACGGCGTCGGCGTACGACAC > 6:140946/1‑149 AACAAAAGCGCCCACCCGCTGTTCGAAGACCCGCAGTTCCGCCGCTTCTTCGGCGATAACCTGCCCAAACAGCGCCGCTGGGAATCAAGCCTGGGTTCGGCGGTAATCATGAGCCCAGAGGGCTACCTGCTGACCAACAACCATGTCACCAGCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1488049‑1487892‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcggcgcTGTTTGGGCAGGTTATCGCCGAAGAAGCGGCGGAACTGCGGGTCTTCGAACAGCGGGTGGGCGCTTTTGTTCACCACCTTGGTGGTGTACAGGTTGGCCACCGCCGGGGCGGCCAGGGTCACGGCGTCGGCGTACGACAC > NC_002947/1487979‑1488118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |