New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1499458	24 (0.400)	10 (0.170)	8/262	NT	28.7%	intergenic (+35/‑129)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 1499495	26 (0.440)					intergenic (+72/‑92)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein

GGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1499310‑1499458 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaCACCGGCAAAGCCGTGGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGCTTCAGCGTTGTCGAA  <  NC_002947/1499495‑1499352                                                                                                                                                                                                                                                                                                       GGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGACGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA                                                                                                                                                  <  1:110810/149‑1                                                                                        GAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGG                                                                                                      >  8:250836/1‑106                                                                                            CCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGG                                                                                                      <  7:24153/102‑1                                                                                            CCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGG                                                                                                      >  8:24153/1‑102                                                                                                                      aagccggCGGGGGGAGCGGGCGGGCCCGCGAACACCGGCAAAGCGGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGC                             <  8:99546/142‑1                                                                                                                           gtctGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCAT                        >  5:118293/5‑149                                                                                                                              tGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCT                                    <  7:267879/133‑1                                                                                                                              tGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCT                                    >  8:267879/2‑134                                                                                                                                TGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACG                    <  5:369453/148‑1                                                                                                                                        GGCGTGCCCGCGAACACGGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTGCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGATTGGCCGCATCACGGGCTTCAGC           <  3:39571/149‑1                                                                                                                                              CCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGCTTCAGCGTTGTC     >  1:66068/1‑149                                                                                                                                               CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTAAGGCTCTGAATGGCCGCATCACGGGCTTCAGCGTTGTC     >  3:294541/1‑148                                                                                                                                               CCGCGAACACCGGCAAAGCCGGTGCAATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGCTTCAGCGTTGTCG    <  6:279559/149‑1                                                                                                                                                 ggtAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTGAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGCTTCAGCGTTGTCGAA  <  7:276816/146‑1                                                                                                                                                 GCGAACACCGGCAAAGCCGGTGCCATGCCCCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGCTTCAGCGTTGTCTAA  <  7:276818/149‑1                                                                                                                                                 GCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGCTTCAGCGTTGTCGAA  >  2:66040/1‑149                                                                                                                                                                                                                                                                                                       GGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1499310‑1499458 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaCACCGGCAAAGCCGTGGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGCTTCAGCGTTGTCGAA  <  NC_002947/1499495‑1499352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.