| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1821235 | NA (NA) | 8 (0.130) | 5/266 | NT | NA | coding (998/1422 nt) | PP_1624 | group II intron‑encoding maturase |
| ? | NC_002947 | = 2070688 | NA (NA) | coding (1062/1422 nt) | PP_1846 | group II intron‑encoding maturase | |||||
CCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1821088‑1821235‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTG < NC_002947/2070688‑2070621 CCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAAAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGG > 1:270004/1‑149CCCGGGCCGGCGAACGGGTGTTGGTCAGCGGCGAGCGCCTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCGGCCAAGG < 6:162783/149‑1 CCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGC > 4:270695/1‑149 CCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCTTGGCTGCtg < 3:187987/149‑3 CCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGC > 2:172678/1‑149 CCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGC < 8:130903/149‑1 GGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGTCAAGGCTGCGCAG > 2:183830/1‑149 GGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCTTGGCTGCtggt < 3:83297/149‑5 TCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGCATTCTGAGCCGG > 4:248331/1‑149 GCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGC > 5:224909/1‑126 GCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGC < 6:224909/126‑1 AAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGTCAAGGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCAC < 1:183830/149‑1 ACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAG < 5:67041/149‑1 TGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGTCTT < 1:367682/149‑1 AACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTG < 3:248331/148‑1 CCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGAGAACGTCTGAAGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1821088‑1821235‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCATCCTTGCCACGCGCAGCCTTG < NC_002947/2070688‑2070621 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |