New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2229186	54 (0.900)	6 (0.100)	5/256	NT	9.8%	coding (322/783 nt)	ycfH	tRNA D‑aminoacylase
	?	NC_002947	= 2229235	58 (1.000)					coding (371/783 nt)	ycfH	tRNA D‑aminoacylase

CCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2229071‑2229186 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgGTCTGCCTGGAGGCCTCCAGGTGCAGGCGGAACGAGGCCTGCTGCAGCTCGGCAGCCTCCGGCTCGTAGTGGTAATCCAGCCCGGTTTCACCAATCGCCACCACATGCGGGTGGGCCAGTTCGCGCAACAACCATTCCAACGCCGGG  <  NC_002947/2229235‑2229089                                                                                                                                                                                                                                                                         CCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGGTCTGCCTGGAGGCCTCCAGGTGCAGGCGGAAC                                                                                                                    >  7:2471/1‑149       CCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGGTCTGCCTGGAGGCCTCCAGGTGCAGGCGGAACGAGGCC                                                                                                              >  7:122034/1‑149                      GGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGGTCTGCCTGGAGGCCTCCAGGTGCAGGCGGAACGAGGCCTGCTGCAGCTCGGCA                                                                                               <  6:14975/149‑1                      GGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGGTCTGCCTGGAGGCCTCCAGGTGCAGGCGGAACGAGGCCTGCTGCAGCTCGGCA                                                                                               <  8:122034/149‑1                       GCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGGTCTGCCTGGAGGCCTCCAGGTGCAGGCGGAACGAGGCCTGCTGCAGCTCGGCAG                                                                                              <  1:149084/149‑1                            GGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGGTCTGCCTGGAGGCCTCCAGGTGCAGGCGGAACGAGGCCTGCTGCAGCTCGGCAGCCTC                                                                                          <  8:2471/148‑1                                                                                                                TGCCGGTCTGCCTGGAGGCCTCCAGGTGCAGGCGGAACGAGGCCTGCTGCAGCTCGGCAGCCTCCGGCTCGTAGTGGTAATCCAGCCCGGTTTCACCAATCGCCACCACATGCGGGTGGGCCAGTTCGCGCA                      >  7:131420/1‑132                                                                                                                TGCCGGTCTGCCTGGAGGCCTCCAGGTGCAGGCGGAACGAGGCCTGCTGCAGCTCGGCAGCCTCCGGCTCGTAGTGGTAATCCAGCCCGGTTTCACCAATCGCCACCACATGCGGGTGGGCCAGTTCGCGCA                      <  8:131420/132‑1                                                                                                                 GCCGGTCTGCCTGGAGGCCTCCAGGTGCAGGCGGAACGAGGCCTGCTGCAGCTCGGCAGCCTCCGGCTCGTAGTGGTAATCCAGCCCGGTTTCACCAATCGCCACCACATGCGGGTGGGCCAGTTCGCGCAACAACCATTCCAACGCCG    >  1:151116/1‑149                                                                                                                   CGGTCTGCCTGGAGGCCTCCAGGTGCAGGCGGAACGAGGCCTGCTGCAGCTCGGCAGCCTCCGGCTCGTAGTGGTAATCCAGCCCGGTTTCACCAATCGCCACCACATGCGGGTGGGCC                                >  7:7413/1‑119                                                                                                                   CGGTCTGCCTGGAGGCCTCCAGGTGCAGGCGGAACGAGGCCTGCTGCAGCTCGGCAGCCTCCGGCTCGTAGTGGTAATCCAGCCCGGTTTCACCAATCGCCACCACATGCGGGTGGGCC                                <  8:7413/119‑1                                                                                                                   CGGTCTGCCTGGAGGCCTCCAGGGGCAGGCGGAACGAGGCCTGCTGCAGCTCGGCAGCCTCCGGCTCGTAGTGGTAATCCAGCCCGGTTTCACCAATCGCCACCACATGCGGGTGGGCCAGTTCGCGCAACAACCATTCCAACGCCGGG  <  7:166105/149‑1                                                                                                                                                                                                                                                                         CCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2229071‑2229186 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgGTCTGCCTGGAGGCCTCCAGGTGCAGGCGGAACGAGGCCTGCTGCAGCTCGGCAGCCTCCGGCTCGTAGTGGTAATCCAGCCCGGTTTCACCAATCGCCACCACATGCGGGTGGGCCAGTTCGCGCAACAACCATTCCAACGCCGGG  <  NC_002947/2229235‑2229089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.