New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2749540 =	39 (0.650)	4 (0.070)	4/260	NT	7.9%	intergenic (+13/+101)	PP_2405/PP_2406	hypothetical protein/quinate/shikimate dehydrogenase
	?	NC_002947	2749629 =	55 (0.940)					intergenic (+102/+12)	PP_2405/PP_2406	hypothetical protein/quinate/shikimate dehydrogenase

GGCAGGCGGATGCGGCGCGGATGCAGGCGCACTTTGCCAGTTTCACCTGATAGAAAAGTGTTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTG‑‑‑‑‑GGGCATGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2749690‑2749540 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACACCGCCATGTTGCTGCCATCCAGCGTGCGGCAGCCCAGTGCCCGGG  >  NC_002947/2749629‑2749774                                                                                                                                                                                                                                                                                                                GGCAGGCGGATGCGGCGCGGATGCAGGCGCACTTTGCCAGTTTCACCTGATAGAAAAGTGTTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTG‑‑‑‑‑GGGCATGCCCGCGAAGAGG                                                                                                                                                      >  3:184762/1‑149                                                                       CGCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTG‑‑‑‑‑GGGCATGCCCGCGAAGAGGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCC                                                                                             >  1:287551/1‑136                                                                       CGCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTG‑‑‑‑‑GGGCATGCCCGCGAAGAGGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCC                                                                                             <  2:287551/136‑1                                                                        GCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTG‑‑‑‑‑GGGCATGCCCGCGAAGAGGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCT                                                                               >  2:232366/1‑149                                                                                  CCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAA                                                                            >  1:28662/1‑147                                                                                                                                                          GCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACACCGCCATGTTGCTGCCATCCAGCGTGCGGCAGCCCAGTGCCCGGG  >  5:348429/1‑149                                                                                                                                                          GCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACACCGCCATGTTGCTGCCATCCAGCGTGC                    <  5:280055/131‑1                                                                                                                                                          GCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACACCGCCATGTTGCTGCCATCCAGCGTGC                    >  6:280055/1‑131                                                                                                                                                                                                                                                                                                                GGCAGGCGGATGCGGCGCGGATGCAGGCGCACTTTGCCAGTTTCACCTGATAGAAAAGTGTTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTG‑‑‑‑‑GGGCATGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2749690‑2749540 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACACCGCCATGTTGCTGCCATCCAGCGTGCGGCAGCCCAGTGCCCGGG  >  NC_002947/2749629‑2749774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.