New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2905912	51 (0.850)	4 (0.070)	4/248	NT	7.6%	intergenic (‑104/+112)	PP_2557/PP_2558	sensory box protein/outer membrane efflux protein
	?	NC_002947	= 2905940	50 (0.890)					intergenic (‑132/+84)	PP_2557/PP_2558	sensory box protein/outer membrane efflux protein

CAGCATCAGGTGGATCAGCCTGGGATACAACGCTTGCAGGTCTACGGGCATGGCTCAGGGTGTCCGCGGCAGGGTGACCGATCATAGCCTGAAGGAATACGTCGCAGCTACGGCAGCCTGCAGGGCGGGTGCCCCTTCCTTGAAACTGGCAACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2905758‑2905912 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcaacgaTCCACGAGCCCCGCACCTTTCGATGCGGTCGTTGCCAGTTTCAAGGAAGGGGCACCCGCCCTGCAGGCTGCCGTAGCTGCGACGTATTCCTTCAGGCTATGATCGGTCACCCTGCCGCGGACACCCTGAGCCATGCCCGTAGACCTGC  <  NC_002947/2905940‑2905793                                                                                                                                                                                                                                                                                                                 CAGCATCAGGTGGATCAGCCTGGGATACAACGCTTGCAGGTCTACGGGCATGGCTCAGGGTGTCCGCGGCAGGGTGACCGATCATAGCCTGAAGGAATACGTCGCAGCTACGGCAGCCTGCAGGGCGGGTGCCCCTTCCTTGAAACTGG                                                                                                                                                            <  8:88148/149‑1        AGGTGGATCAGCCTGGGATACAACGCTTGCAGGTCTACGGGCATGGCTCAGGGTGTCCGCGGCAGGGTGACCGATCATAGCCTGAAGGAATACGTCGCAGCTACGGCAGCCTGCAGGGCGGGTGCCCCTTCCTTGAAACTGGCAACGA                                                                                                                                                      <  3:306631/148‑1                             AACGCTTGCAGGTCTACGGGCATGGCTCAGGGTGTCCGCGGCAGGGTGACCGATCATAGCCTGAAGGAATACGTCGCAGCTACGGCAGCCTGCAGGGCGGGTGCCCCTTCCTTGAAACTGGCAACGATCCACGAGCCCCGCACCTTTC                                                                                                                                 >  3:1400/1‑148                                             CGGGCATGGCTCAGGGTGTCCGCGGCAGGGTGACCGATCATAGCCTGAAGGAATACGTCGCAGCTACGGCAGCCTGCAGGGCGGGTGCCCCTTCCTTGAAACTGGCAACGATCCACGAGCCCCGCACCTTTCGATGCGGTCGTTGCCA                                                                                                                 <  4:1400/148‑1                                                       TCAGGGTGTCCGCGGCAGGGTGACCGATCATAGCCTGAAGGAATACGTCGCAGCTACGGCAGCCTGCAGGGCGGGTGCCCCTTCCTTGAAACTGGCAACGATCCACGAGCCCCGCACCTTTCGATGCGGTCGTTGCCAGTTTCAA                                                                                                          >  3:120774/1‑145                                                       TCAGGGTGTCCGCGGCAGGGTGACCGATCATAGCCTGAAGGAATACGTCGCAGCTACGGCAGCCTGCAGGGCGGGTGCCCCTTCCTTGAAACTGGCAACGATCCACGAGCCCCGCACCTTTCGATGCGGTCGTTGCCAGTTTCAA                                                                                                          <  4:120774/145‑1                                                                                                                                                     GCAACGATCCACGAGCCCCGCACCTTTCGATGCGGTCGTTGCCAGTTTCAAGGAAGGGGCACCCGCCCTGCAGGCTGCCGTAGCTGCGACGTATTCCTTCAGGCTATGATCGGTCACCCTGCCGCGGACACCCTGAGCCATGCCCGTA         <  2:308079/148‑1                                                                                                                                                      CAACGATCCACGAGCCCCGCACCTTTCGATGCGGTCGTAGCCAGTTTCAAGGAAGGGGCACCCGCCCTGCAGGCTGCCGTAGCTGCGACGTATTCCTTAAGGCTATGATAGGTCACCCTGCCCCGGAAACCCTGAGACATGCCCGTAca       >  8:237019/1‑147                                                                                                                                                       AACGATCCACGAGCCCCGCACCTTTCGATGCGGTCGTTGCCAGTTTCAAGGAAGGGGCACCCGCCCTGCAGGCTGCCGTAGCTGCGACGTATTCCTTCAGGCTATGATCGGTCACCCTGCCGCGAACACCCTGAGCCATGCCCGTAGAC      >  6:263983/1‑149                                                                                                                                                           ATCCACGAGCCCCGCACCTTTCGATGCGGTCGTTGCCAGTTTCAAGGAAGGGGCACCCGCCCTGCAGGCTGCCGTAGCTGCGACGTATTCCTTCAGGCTATGATCGGTCACCCTGCCGCGGACACCCTGAGCCATGCCCGTAGACCTGC  <  2:358182/149‑1                                                                                                                                                           ATCCACGAGCCCCGCACCTTTCGATGCGGTCGTTGCCAGTTTCAAGGAAGGGGCACCCGCCCTGCAGGCTGCCGTAGCTGCGACGTATTCCTTCAGGCTATGATCGGTCACCCTGCCGCGGACACCCTGAGCCATGCCCGTAGACCTGC  <  4:250533/149‑1                                                                                                                                                                                                                                                                                                                 CAGCATCAGGTGGATCAGCCTGGGATACAACGCTTGCAGGTCTACGGGCATGGCTCAGGGTGTCCGCGGCAGGGTGACCGATCATAGCCTGAAGGAATACGTCGCAGCTACGGCAGCCTGCAGGGCGGGTGCCCCTTCCTTGAAACTGGCAACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2905758‑2905912 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcaacgaTCCACGAGCCCCGCACCTTTCGATGCGGTCGTTGCCAGTTTCAAGGAAGGGGCACCCGCCCTGCAGGCTGCCGTAGCTGCGACGTATTCCTTCAGGCTATGATCGGTCACCCTGCCGCGGACACCCTGAGCCATGCCCGTAGACCTGC  <  NC_002947/2905940‑2905793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.