New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2974744	53 (0.880)	3 (0.050)	3/252	NT	5.9%	coding (677/777 nt)	PP_2601	IclR family transcriptional regulator
	?	NC_002947	= 2974769	46 (0.810)					coding (702/777 nt)	PP_2601	IclR family transcriptional regulator

GTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2974630‑2974744 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcTGCGAGGCGGCTCTGTGCCAGCCGCGCGCTGGGCCCGGCGATGCTCAGCACGCCAATCACCTCGTCACTTTGCGGGCGGCGCACCACTGCGGCCAGGGCTGAGGTGCCGATGGCGGAGGTTTCCTCGACCCAGGCATAACCACG  <  NC_002947/2974769‑2974626                                                                                                                                                                                                                                                                     ggttTGCCTGGGTGGAGGAACTCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGCGCGCTGGGC                                                                                                                <  6:261918/145‑1                                             CTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGCGCGCTGGGCCCGGCGAT                                                                                                        <  3:82299/113‑1                                             CTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGCGCGCTGGGCCCGGCGAT                                                                                                        >  4:82299/1‑113                                                                                                               AGCGCTGCGAGGCGGCTCTGTGCCAGCCGCGCGCTGGGCCCGGCGATGCTCAGCACGCCAATCACCTCGTCACTTTGCGGGCGGCGCACCACTGCGGCCAGGGCTGAGGTGCCGATGGCGGAGGTTTCCTCGACCCAGGCATAACCACG  >  5:277791/1‑149                                                                                                                GCGCTGCGAGGCGGCTCTGTGCCAGCCGCGCGCTGGGCCCGGCGATGCTCAGCACGCCAATCACCTCGTCACTTTGCGGGCGGCGCACCACTGCGGCCAGGGCTGAGGTGCCGATGGCGGAGG                           >  2:214917/1‑123                                                                                                                                                                                                                                                                     GTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2974630‑2974744 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcTGCGAGGCGGCTCTGTGCCAGCCGCGCGCTGGGCCCGGCGATGCTCAGCACGCCAATCACCTCGTCACTTTGCGGGCGGCGCACCACTGCGGCCAGGGCTGAGGTGCCGATGGCGGAGGTTTCCTCGACCCAGGCATAACCACG  <  NC_002947/2974769‑2974626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.