New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3458370 =	55 (0.910)	3 (0.050)	3/256	NT	5.5%	coding (321/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease
	?	NC_002947	3458412 =	50 (0.860)					coding (279/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease

GTTTCATCAAACTGTACTTCCCGGTATTCCTGCTGGGGGCGGTGTTCGGCAAGCTGATCGAGCTGTCCGGTTTCTCCCGCTCGATCGTCGCCGCGGCCATCCGCCTGCTCGGCACCCGCCAGGCGATGCTGGTCATCGTACTGGTCTGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3458521‑3458370 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccGAGCAGGCGGATGGCCGCGGCGACGATCGAGCGGGAGAAACCGGACAGCTCGATCAGCTTGCCGAACACCGCCCCCAGCAGGAATACCGGGAAGTACAGTTTGATGAAACCGACCATTTTTTCCATGAACACCCCCGTGAACGCAGGG  >  NC_002947/3458412‑3458559                                                                                                                                                                                                                                                                                                              GTTTCATCAAACTGTACTTCCCGGTATTCCTGCTGGGGGCGGTGTTCGGCAAGCTGATCGAGCTGTCCGGTTTCTCCCGCTCGATCGTCGCCGCGGCCATCCGCCTGCTCGGCACCCGCCAGGCGATGCTGGTCATCGTACTGGTCTGT                                                                                                                                                         <  3:106389/149‑1                                                                                                          TGCTCGGCACCCGCCAGGCGATGCTGGTCATCGTACTGGTCTGTGCCGAGCAGGCGGATGGCCGCGGCGACGATCGAGCGGGAGAAACCGGACAGCTCGATCAGCTTGCCGAACACCGCCCCCAGCAGGAATACCGGGAAGTACAGTTT                                                >  3:141775/1‑149                                                                                                           GCTCGGCACCCGCCAGGCGATGCTGGTCATCGTACTGGTCTGTGCCGAGCAGGCGGATGGCCGCGGCGACGATCGAGCGGGAGAAACCGGACAGCTCGATCAGCTTGCCGAACACCGCCCCCAGCAGGAATACCGGGAAGTACAGTTT                                                >  7:191684/1‑148                                                                                                             TCGGCACCCGCCAGGCGATGCTGGTCATCGTACTGGTCTGTGCCGAGCAGGCGGATGGCCGCGGCGACGATCGAGCGGGAGAAACCGGACAGCTCGATCAGCTTGCCGAACACCGCCCCCAGCAGGAATACCGGGAAGTACAGTTTGAT                                             >  1:17009/1‑149                                                                                                                                                       CCGAGCATGCGGATGGCCGCGGCGACGATCGAGCGGGAGAAACCGGACAGCTCGATCAGCTTGCCGAACACCGCCCCCAGCAGGAATACCGGGAAGTACAGTTTGATGAAACCGACCATTTTTTCCATGAACACCCCCGTGAACGCAG    <  7:276544/148‑1                                                                                                                                                       CCGAGCAGGCGGATGGCCGCGGCGACGATCGAGCGGGAGAAACCGGACAGCTCGATCAGCTTGCCGAACACCGCCCCCAGCAGGAATACCGGGAAGTACAGTTTGATGAAACCGACCATTTTTTCCATGAACACCCCCGTGAACGCAGG   <  3:263526/149‑1                                                                                                                                                       CCGAGCAGGCGGATGGCCGCGGCGACGATCGAGCGGGAGAAACCGGACAGCTCGATCAGCTTGCCGAACACCGCCCCCAGCAGGAATACCGGGAAGTACAGTTTGATGAAACCGACCATTTTTTCCATGAACACCCCCGTGAACGCAGG   <  8:27373/149‑1                                                                                                                                                       CCGAGCAGGCGGATGGCCGCGGCGACGATCGAGCGGGAGAAACCGGACAGCTCGATCAGCTTGCCGAACACCGCCCCCAGCAGGAATACCGGGAAGTACAGTTTGATGAAACCGACCATTTTTTCCATGAACACCCCCGTGAACGCAG    <  4:141775/148‑1                                                                                                                                                        CGAGCAGGCGGATGGCCGCGGCGACGATCGAGCGGGAGAAACCGGACAGCTCGATCAGCTTGCCGAACACCGCCCCCAGCGGGAATACCGGGAAGTACAGTTTGATGAAACCGACCATTTTTTCCATGAACACCCCCGTGAACGCAGGG  <  4:4511/149‑1                                                                                                                                                        CGAGCAGGCGGATGGCCGCGGCGACGATCGAGCGGGAGAAACCGGACAGCTCGATCAGCTTGCCGAACACCGCCCCCAGCAGGAATACCGGGAAGTACAGTTTGATGAAACCGACCATTTTTTCCATGAACACCCCCGTGAACGCAGGG  <  4:106389/149‑1                                                                                                                                                                                                                                                                                                              GTTTCATCAAACTGTACTTCCCGGTATTCCTGCTGGGGGCGGTGTTCGGCAAGCTGATCGAGCTGTCCGGTTTCTCCCGCTCGATCGTCGCCGCGGCCATCCGCCTGCTCGGCACCCGCCAGGCGATGCTGGTCATCGTACTGGTCTGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3458521‑3458370 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccGAGCAGGCGGATGGCCGCGGCGACGATCGAGCGGGAGAAACCGGACAGCTCGATCAGCTTGCCGAACACCGCCCCCAGCAGGAATACCGGGAAGTACAGTTTGATGAAACCGACCATTTTTTCCATGAACACCCCCGTGAACGCAGGG  >  NC_002947/3458412‑3458559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.