| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3532978 | 57 (0.950) | 3 (0.050) | 3/252 | NT | 5.1% | coding (205/906 nt) | PP_3121 | transcriptional regulator, LysR family |
| ? | NC_002947 | = 3533046 | 57 (1.000) | coding (137/906 nt) | PP_3121 | transcriptional regulator, LysR family | |||||
CCTTGGGGTAGCGCTGGCGAAACACCTTGAGCGAGTGGGGCAACAGGTTGCCGGCAAAAGCCGGCATGGCTGCCACCGACACACGGCCCAATTGCAGGGTGAAGCGCTGGCGCAGCATCTCTTCGGTGTCGTCCCAGTCGGCCAGCAGGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3532825‑3532978‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcgCCCTGCTCAGCCGCACCACGCGCAGCGTCAGCCTGACTGCCGAAGGCGAAGTGCTGCTGCCACTGGCACGCCGCCTGCTGGCCGACTGGGACGACACCGAAGAGATGCTGCGCCAGCGCTTCACCCTGCAATTGGGCCGTGTGTC < NC_002947/3533046‑3532902 CCTTGGGGTAGCGCTGGCGAAACACCTTGAGCGAGTGGGGCAACAGGTTGCCGGCAAAAGCCGGCATGGCTGCCACCGACACACGGCCCAATTGCAGGGTGAAGCGCTGGCGCAGCATCTCTTCGGTGTCGTCCCAGTCGGCCAGCAGG > 7:41907/1‑149 CTTGGGGTAGCGCTGGCGAAACACCTTGAGCGAGTGGGGCAACAGGTTGCCGGCAAAAGCCGGCATGGCTGCCACCGACACACGGCCCAATTGCAGGGTGAAGCGCTGGCGCAGCATCTCTTCGGTGTCGTCCCAGTCGGCCAGCAGGC > 1:19600/1‑149 GGGTAGCGCTGGCGAAACACCTTGAGCGAGTGGGGCAACAGGTTGCCGGCAAAAGCCGGCATGGCTGCCACCGACACACGGCCCAATTGCAGGGTGAAGCGCTGGCGCAGCATCTCTTCGGTGTCGTCCCAGTCGGCCAGCAGGCGGCG < 2:19600/149‑1 CGGCCCAATTGCAGGGTGAAGCGCTGGCGCAGCATCTCTTCGGTGTCGTCCCAGTCGGCCAGCAGGCGGCGCCCTGCTCAGCCGCACCACGCGCAGCGTCAGCCTGACTGCCGAAGGCGAAGTGCTGCTGCCACTGGCACGCCGCCTGC < 7:17955/149‑1 AGCGCTGGCGCAGCATCTCTTCGGTGTCGTCCCAGTCGGCCAGCAGGCGGCGCCCTGCTCAGCCGCACCACGCGCAGCGTCAGCCTGACTGCCGAAGGCGAAGTGCTGCTGCCACTGGCACGCCGCCT > 5:247843/1‑128 AGCGCTGGCGCAGCATCTCTTCGGTGTCGTCCCAGTCGGCCAGCAGGCGGCGCCCTGCTCAGCCGCACCACGCGCAGCGTCAGCCTGACTGCCGAAGGCGAAGTGCTGCTGCCACTGGCACGCCGCCT < 6:247843/128‑1 GCGGCGCCCTGCTCAGCCGCACCACGCGCAGCGTCAGCCTGACTGCCGAAGGCGAAGTGCTGCTGCCACTGGCACGCCGCCTGCTGGCCGACTGGGACGACACCGAAGAGATGCTGCGCCAGCGCTTCACCCTGCAATTGGGCCGTGTG < 6:26145/149‑1 GCGGCGCCCTGCTCAGCCGCACCACGCGCAGCGTCAGCCTGACTGCCGAAGGCGAAGTGCTGCTGCCACTGGCACGCCGCCTGCTGGCCGACTGGGACGACACCGAAGAGATGCTGCGCCAGCGCTTCACCCTGCAATTGGGCCGTGTG > 7:305107/1‑149 GGCGCCCTGCTCAGCCGCACCACGCGCAGCGTCAGCCTGACTGCCGAAGGCGAAGTGCTGCTGCCACTGGCACGCCGCCTGCTGGCCGACTGGGACGACACCGAAGAGATGCTGCGCCAGCGCTTCACCCTGCAATTGGGCCGTGTGTC < 3:329307/149‑1 GGCGCCCTGCTCAGCCGCACCACGCGCAGCGTCAGCCTGACTGCCGAAGGCGAAGTGCTGCTGCCACTGGCACGCCGCCTGCTGGCCGACTGGGACGACACCGAAGAGATGCTGCGCCAGCGCTTCACCCTGCAATTGGGCCGTGTGTC < 7:80139/149‑1 CCTTGGGGTAGCGCTGGCGAAACACCTTGAGCGAGTGGGGCAACAGGTTGCCGGCAAAAGCCGGCATGGCTGCCACCGACACACGGCCCAATTGCAGGGTGAAGCGCTGGCGCAGCATCTCTTCGGTGTCGTCCCAGTCGGCCAGCAGGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3532825‑3532978‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcgCCCTGCTCAGCCGCACCACGCGCAGCGTCAGCCTGACTGCCGAAGGCGAAGTGCTGCTGCCACTGGCACGCCGCCTGCTGGCCGACTGGGACGACACCGAAGAGATGCTGCGCCAGCGCTTCACCCTGCAATTGGGCCGTGTGTC < NC_002947/3533046‑3532902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |