New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3904713 =	53 (0.880)	3 (0.050)	3/254	NT	5.5%	coding (30/1593 nt)	ilvA‑I	threonine deaminase
	?	NC_002947	3904749 =	52 (0.910)					intergenic (‑7/+4)	ilvA‑I/PP_mr42	threonine deaminase/P9 ncRNA

CTACCCCAATGAATACATTCCCGCACGTGAACGCCATTATTATTACCGCCATTATCAGCTTGGCGGGCTAGCGCGTACGTGCACCGAACCCGCCCTGGAGGCGGGTTTTTTCTCTCTGACTCTTGGGCAACGTAAAAATAGCCAAGGAGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3904864‑3904713 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagtcaGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTATTCATTGGGGTAGGAACTTAGCCTGCCTCGCAGCCGAAAGTCAAC  >  NC_002947/3904749‑3904896                                                                                                                                                                                                                                                                                                              CTACCCCAATGAATACATTCCCGCACGTGAACGCCATTATTATTACCGCCATTATCAGCTTGGCGGGCTAGCGCGTACGTGCACCGAACCCGCCCTGGAGGCGGGTTTTTTCTCTCTGACTCTTGGGCAACGTAAAAATAGCCAAGGA                                                                                                                                                          <  1:54118/148‑1                                                                                                                  CTCTGACTCTTGGGCAACGTAAAAATAGCAAAGGAGTCAGAGAGAAAAAACCCGACTCCAGGGCGGGTTCGGTGCACGTACGAGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTAACGTGCGGGAATGTATTCATTG                                        >  1:156376/1‑149                                                                                                                   TCTGACTCTTGGGCAACGTAAAAATAGCCAAGGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTATTCATTGG                                       >  3:324580/1‑149                                                                                                                     TGACTCTTGGGCAACGTAAAAATAGCCAAGGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTATTCATTGGGG                                     >  4:181304/1‑149                                                                                                                                                  GGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTATTCATTGGGGGAGGAACTTAGCCTGCCTCGCAGCCTAAA        <  4:324580/149‑1                                                                                                                                                    AGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTATTCATTGGGGTAGGAACTTAGCCTGCCTCGCAGCCGAAAGT      <  3:181304/149‑1                                                                                                                                                     GTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTATTCATTGGGGTAGGAACTTAGCCTGCCTCGCAGCCGAAAGTC     <  7:345576/149‑1                                                                                                                                                      TCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTATTCATTGGGGTAGGAACTTAGCCTGCCTCGCAGCCGAAAGTC     >  6:100438/1‑148                                                                                                                                                        AGAGAGAAAATACCCGCCTCCAGGGCGTGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTATTCATTTGGGTAGGAACTTAGCCTGCCTCGCAGCCGAAAGTCAAC  <  3:214716/149‑1                                                                                                                                                        AGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTATTCATTGGGGTAGGAACTTAGCCTGCCTCGCAGCCGAAAGTCAA   <  8:213836/148‑1                                                                                                                                                                                                                                                                                                              CTACCCCAATGAATACATTCCCGCACGTGAACGCCATTATTATTACCGCCATTATCAGCTTGGCGGGCTAGCGCGTACGTGCACCGAACCCGCCCTGGAGGCGGGTTTTTTCTCTCTGACTCTTGGGCAACGTAAAAATAGCCAAGGAGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3904864‑3904713 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagtcaGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTATTCATTGGGGTAGGAACTTAGCCTGCCTCGCAGCCGAAAGTCAAC  >  NC_002947/3904749‑3904896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.