New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3970211 =	NA (NA)	5 (0.090)	4/254	NT	NA	coding (130/1536 nt)	PP_3501	transposase
	?	NC_002947	3970241 =	NA (NA)					coding (160/1536 nt)	PP_3501	transposase

AAGCGGGAAGAAGCTGTTTCAGCTCGGCCTCGATAGCTTCAAGGTCTGTATCGAGCAGG‑TCGTCCAGCAAGCTGCCTTGCGCCGGGCTGATTTGCTCGCTGCGCTTGGCAAACTTGTGGCGTTTGAGCAGGGCGATTTCGAACTTGAACTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3970364‑3970211 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctcAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCC‑GGCGCAAGGCAGCTTGCTGGACGACCTGCTCGATACAGACCTTGAAGCTATCGAGGCCGAGCTGAAACAGCTTCTTCCCGCTTCGTCACAGGCCGAGCCACGGC  >  NC_002947/3970241‑3970385                                                                                                                                                                                                                                                                                                               AAGCGGGAAGAAGCTGTTTCAGCTCGGCCTCGATAGCTTCAAGGTCTGTATCGAGCAGG‑TCGTCCAGCAAGCTGCCTTGCGCCGGGCTGATTTGCTCGCTGCGCTTGGCAAACTTGTGGCGTTTGAGCAGGGCGATTTCGAACTTGAAC                                                                                                                                                         <  4:146081/149‑1   GCGGGAAGAAGCTGTTTCAGCTCGGCCTCGATAGCTTCAAGGTCTGTATCGAGCAGG‑TCGTCCAGCAAGCTGCCTTGCGCCGGGCTGATTTGCTCGCTGCGCTTGGCAAACTTGTGGCGTTTGAGCAGGGCGATTTCGAACTTGAACTG                                                                                                                                                       <  6:270683/149‑1     GGGAAGAAGCTGTTTCAGCTCGGCCTCGATAGCTTCAAGGTCTGTATCGAGCAGGATCGTCCAGCAAGCTGCCTTGCGCCGGGCTGATTTGCTCGCTGCGCTTGGCAAACTTGTGGCGTTTGAGCAGGGAGATTTCGAACTTGAACTG                                                                                                                                                       >  1:101850/1‑148      GGAAGAAGCTGTTTCAGCTCGGCCTCGATAGCTTCAAGGTCTGTATCGAGCAGG‑TCGTCCAGCAAGCTGCCTTGCGCCGGGCTGATTTGCTCGCTGCGCTTGGCAAACTTGTGGCGTTTGAGCAGGGCGAGTTCGAACTTGAACTGCTC                                                                                                                                                    >  4:62806/1‑149       GAAGAAGCTGTTTCAGCTCGGCCTCGATAGCTTCAAGGTCTGTATCGAGCAGG‑TCGTCCAGCAAGCTGCCTTGCGCCGGGCTGATTTGCTCGCTGCGCTTGGCAAACTTGTGGCGTTTGAGCAGGGCGATTTCGAACTTGAACTGCTC                                                                                                                                                    >  6:213392/1‑148       GAAGAAGCTGTTTCAGCTCGGCCTCGATAGCTTCAAGGTCTGTATCGAGCAGG‑TCGTCCAGCAAGCTGCCTTGCGCCGGGCTGATTTGCTCGCTGCGCTTGGCAAACTTGTGGCGTTTGAGCAGGGCGATTTCGAACTTGAACTGCTC                                                                                                                                                    >  5:384776/1‑148                 TTTCAGCTCGGCCTCGATAGCTTCAAGGTCTGTATCGAGCAGG‑TCGTCCAGCAAGCTGCCTTGCGCCGGCCTGATTTGCTCGCTGCGCTTGGCAAACTTGTGGCGTTTGAGCAGTTCAAGTTCGAAATCGCCCTGCTCAAACGCCAC                                                                                                                                           <  1:119650/147‑1                                                                                      GGCTGATTTGCTCGCTGCGCTTGGCAAACTTGTGGCGTTTGAGCAGGGCGATTTCGAACTTGAACTGCT                                                                                                                                                     <  5:360173/69‑1                                                                                      GGCTGATTTGCTCGCTGCGCTTGGCAAACTTGTGGCGTTTGAGCAGGGCGATTTCGAACTTGAACTGCT                                                                                                                                                     >  6:360173/1‑69                                                                                                                          GTTTGAGCAGGGCGATTTCGAACTTGAACTGCTCAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCC‑GGCGCAAGGCAGCTTGCTGGACGACCTGCTCGATACAGACCTTGAAGCTATCGAGGCCGAGCTGAAACAGCTTC                                >  3:370171/1‑149                                                                                                                          GTTTGAGCAGGGCGATTTCGAACTTGAACTGCTCAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCC‑GGCGCAAGGCAGCTTGCTGGACGACCTGCTCGATACAGACCTTGAAGCTATCGAGGCCGAGCTGAAACAGCTTC                                >  1:359228/1‑149                                                                                                                           TTTGAGCAGGGCGATTTCGAACTTGAACTGCTCAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAA                                                                                                                   >  5:143932/1‑66                                                                                                                           TTTGAGCAGGGCGATTTCGAACTTGAACTGCTCAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAA                                                                                                                   <  6:143932/66‑1                                                                                                                                                        GCTCAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCC‑GGCGCAAGGCAGCTTGCTGGACGACCTGCTCGATACAGACCTTGAAGCTATCGAGGCCGAGCTGAAACAGCTTCTTCCCGCTTCGTCACCTGCCTAGCCACGG   >  4:100541/1‑148                                                                                                                                                        GCTCAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCC‑GGCGCAAGGCAGCTTGCTGGACGACCTGCTCGATACAGACCTTGAAGCTATCGAGGCCGAGCTGAAACAGCTTCTTCCCGCTTCGTCACAGGCCGAGCCACGG   >  4:153177/1‑148                                                                                                                                                         CTCAAACGCCACAAGTTTGCCAAGGGCATCGATCAAATCAGCCC‑GGCGCAAGGCAGCTTGCTGGTCGACCTTGTCGATTCAGACCTTGAAGCTATCGAGGCCGAGCTGAAACAGCTTCTTCCCGCTTCGTCACA                <  7:269504/134‑1                                                                                                                                                         CTCAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCC‑GGCGCAAGGCAGCTTGCTGGACGACCTGCTCGATACAGACCTTGAAGCTATCGAGGCCGAGCTGAAACAGCTTCTTCCCGCTTCGTCACAGGCCGAGCCACGG   <  5:139073/147‑1                                                                                                                                                         CTCAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCC‑GGCGCAAGGCAGCTTCCTGGACGACCTGCTCGATACAGACCTTCAAGATATCGAGGCCGAGCTGAAACAGCTTCTTCCCGCTACGTCACA                >  8:269504/1‑134                                                                                                                                                          TCAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCCGGGCGCAAGGCAGCTTGCTGGACGCCCTGCTCGATACAGACCTTGAAGCTATCGAGGCCGAGCTGAAACAGCTTCTTCCCGCTTCGTCACAGGCCGAGCCACGGC  >  1:77253/1‑148                                                                                                                                                                                                                                                                                                               AAGCGGGAAGAAGCTGTTTCAGCTCGGCCTCGATAGCTTCAAGGTCTGTATCGAGCAGG‑TCGTCCAGCAAGCTGCCTTGCGCCGGGCTGATTTGCTCGCTGCGCTTGGCAAACTTGTGGCGTTTGAGCAGGGCGATTTCGAACTTGAACTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3970364‑3970211 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctcAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCC‑GGCGCAAGGCAGCTTGCTGGACGACCTGCTCGATACAGACCTTGAAGCTATCGAGGCCGAGCTGAAACAGCTTCTTCCCGCTTCGTCACAGGCCGAGCCACGGC  >  NC_002947/3970241‑3970385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.