New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4357168 =	57 (0.950)	3 (0.050)	3/252	NT	5.2%	coding (537/1023 nt)	PP_3831	hypothetical protein
	?	NC_002947	4357214 =	56 (0.980)					coding (583/1023 nt)	PP_3831	hypothetical protein

GAAACTGATTGACCTCGCTGGAGCCGACACTATGGCGCTGGCCATCTTCATCCAGGTACTGAAACAGTGCCTGCCCAGGCAGTTCCATGCAGCGTTTGAGTAGGTTGGCCAAGCGCCGGTCGTTGAGGGTGACGTTGTGTTCGACGCCGCGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4357322‑4357168 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcttgGCCAACCTACTCAAACGCTGCATGGAACTGCCTGGGCAGGCACTGTTTCAGTACCTGGATGAAGATGGCCAGCGCCATAGTGTCGGCTCCAGCGAGGTCAA  >  NC_002947/4357214‑4357314                                                                                                                                                                                                                                                                  GAAACTGATTGACCTCGCTGGAGCCGACACTATGGCGCTGGCCATCTTCATCCAGGTACTGAAACAGTGCCTGCCCAGGCAGTTCCATGCAGCGTTTGAGTAGGTTGGCCAAGCGCCGGTCGTTGAGGGTGACGTTGTGTTCGACGCCG                                                                                                             >  3:209411/1‑149    ACTGATTGACCTCGCTGGAGCCGACACTATGGCGCTGGCCATCTTCATCCAGGTACTGAAACAGTGCCTGCCCAGGCAGTTCCATGCAGCGTTTGAGTAGGTTGGCCAAGCGCCGGTCGTTGAGGGTGACGTTGTGTTCGCCGCCGCGC                                                                                                          >  4:293584/1‑149                                                                                                             CCAAGCGCCGGTCGTTGAGGGTGACGTTGTGTTCGACGCCGCGCTTGGCCAACCTACTCAAACGCTGCATGGAACTGCCTGGGCAGGCACTGTTTCAGTACCTGGATGAAGATGGCCAGCGCCATAGTGTCGGCTCCAGCGAGGTCAA  >  2:319261/1‑148                                                                                                               AAGCGCCGGTCGTTGAGGGTGAGTATGTGTTCGACGCCGCGCTTGGCCAACCTACTCAAACGCTGCATGGAACTGCCTGGGCAGGCACTGTTTCAGTACCT                                               >  7:56347/1‑101                                                                                                               AAGCGCCGGTCGTTGAGGGTGACGTTGTGTTCGACGCCGCGCTTGGCCAACCTACTCAAACGCTGCATGGAACTGCCTGGGCAGGCACTGTTTCAGTACCT                                               <  8:56347/101‑1                                                                                                                                                                                                                                                                  GAAACTGATTGACCTCGCTGGAGCCGACACTATGGCGCTGGCCATCTTCATCCAGGTACTGAAACAGTGCCTGCCCAGGCAGTTCCATGCAGCGTTTGAGTAGGTTGGCCAAGCGCCGGTCGTTGAGGGTGACGTTGTGTTCGACGCCGCGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4357322‑4357168 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcttgGCCAACCTACTCAAACGCTGCATGGAACTGCCTGGGCAGGCACTGTTTCAGTACCTGGATGAAGATGGCCAGCGCCATAGTGTCGGCTCCAGCGAGGTCAA  >  NC_002947/4357214‑4357314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.