New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4962828 =	67 (1.110)	6 (0.110)	5/252	NT	8.9%	coding (827/1218 nt)	fleS	two‑component system sensor histidine kinase FleS
	?	NC_002947	4962862 =	60 (1.050)					coding (793/1218 nt)	fleS	two‑component system sensor histidine kinase FleS

TTCGCCGCGACCTTGAAGGAGCGCCTGCACGAACTGGAACACCAGGTGCGCGACATGCTGGTGTTTGCCCGTGGCGAGTTGCCACTGGGGGACCGGGTGACCCCGAAAGCGCTGTTCCAGGCCCTGCAACAGGCGGCCCAGGCGCATGTGCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4962982‑4962828 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcagggCCTGGAACAGCGCTTTCGGGGTCACCCGGTCCCCCAGTGGCAACTCGCCACGGGCAAACACCAGCATGTCGCGCACCTGGTGTTCCAGTTCGTGCAGGCGCTCCTTCAAGGTCGCGGCGAAGCGCTGACGGGTTTGCGCGCTCAG  >  NC_002947/4962862‑4963006                                                                                                                                                                                                                                                                                                              TTCGCCGCGACCTTGAAGGAGCGCCTGCACGAACTGGAACACCAGGTGCGCGACATGCTGGTGTTTGCCCGTGTCGAGTTGCCACTGGGGGACCGGGTGACCCCGAAAGCGCTGTTCCAGGCCCTGCAACAGGCGGCCCAGGCGCATGT                                                                                                                                                         >  3:136085/1‑149    GCCGCGACATTGAAGGAGCTCCTGCACGAACTGGAACACCAGGTGCGCGACATGCTGGTGTTTGCCCGTGGCGAGTTGCCACTGGGGGACCGGGTGACCCCGAAAGCGCTGTTCCAGGCCCTGCAACAGGCGGCCCAGGCGCATGTG                                                                                                                                                        >  7:124238/1‑147      CGCGACCTTGAAGGAGCGCCTGCACGAACTGGAACACCAGGTGCGCGACATGCTGGTGTTTGCCCGTGGCGAGTTGCCACTGGGGGACCGGGTGACCCCGAAAGCGCTGTTCCAGGCCCTGCAACAGGCGGCCCAGGCGCATGTGCAGG                                                                                                                                                    <  2:133002/149‑1                                                                                                                     CCAGGCCCTGCAACAGGCGGCCCAGGCGCATGTGCAGGGCCTGGAACAGCGCTTTCGGGGTCACCCGGTCCCCCAGTGGCAACTCGCCACGGGCAAACACCAGCATGTCGCGCACCTGGTGTTCCAGTTCGTGCAGGCGCTCCTTCAAG                                     >  6:23679/1‑149                                                                                                                           CCTGCAACAGGCGGCCCAGGCGCATGTGCAGGGCCTGGAACAGCGCTTTCGGGGTCACCCGGTCCCCCAGTGGCAACTCGCCACGGGCAAACACCAGCATGTCGCGCACCTGGTGTTCCAGTTCGTGCAGGCGCTCCTTCAAGGTCGCG                               >  2:349046/1‑149                                                                                                                            caGCAACAGGCGGCCCAGGCGCATGTGCAGGGCCTGGAACAGCGCTTTCGGGGTCACCCGGTCCCCCAGTGGCAACTCGCCACGGGCAAACACCAGCATGTCGCGCACCTGGTGTTCCAGTTCGTGCAGGCGCTCCTTCAAGGTCGCGG                              >  5:138092/3‑149                                                                                                                            CTGCAACAGGCGGCCCAGGCGCATGTGCAGGGCCTGGAACAGCGCTTTCGGGGTCACCCGGTCCCCCAGTGGCAACTCGCCACGGGCAAACACCAGCATGTCGCGCACCTGGTGTTCCA                                                            <  7:347143/119‑1                                                                                                                            CTGCAACAGGCGGCCCAGGCGCATGTGCAGGGCCTGGAACAGCGCTTTCGGGGTCACCCGGTCCCCCAGTGGCAACTCGCCACGGGCAAACACCAGCATGTCGCGCACCTGGTGTTCCA                                                            >  8:347143/1‑119                                                                                                                                AACAGGCGGCCCAGGCGCATGTGCAGGGCCTGGAACAGCGCTTTCGGGGTCACCCGGTCCCCCAGTGGCAACTCGCCACGGGCAAACACCAGCATGTCGCGCACCTGGTGTTCCAGTTCGTGCAGGCGCTCCTTCAAGGTCGCGGCGAA                          <  1:349046/149‑1                                                                                                                                                       CAGGGCCTGGAACAGCGCTTTCGGGGTCACCCGGTCCCCCAGTGGCAACTCGCCACGGGCAAACACCAGCATGTCGCGCACCTGGTGTTCCAGTTCGTGCAGGCGCTCCTTCAAGGTCGCGGCGAAGCGCTGACGGGTTTGCGCGCTCA   <  6:138092/149‑1                                                                                                                                                       CAGGGCCTGGAACAGCGCTTTCGGGGTCACCCGGTCCCCCAGTGGCAACTCGCCACGGGCAAACACCAGCATGTCGCGCACCTGGTGTTCCAGTTCGTGCAGGCGCTCCTTCAAGGTCGCGGCGAAGCGCTGACGGGTTTGCGCGCTC    <  7:219242/148‑1                                                                                                                                                        AGGGCCTGGAACAGCGCTTTCGGGGTCACCCGGTCCCCCAGTGGCAACTCGCCACGGGCAAAGACCAGCATGTCGCGCACCTGGTGTTCCAGTTCGTGCAGGCGCTCCTTCAAGGTCGCGGCGAAGCGCTGACGGGTTTGCGCGCTCAG  <  2:266740/149‑1                                                                                                                                                        AGGGCCTGGAACAGCGCTTTCGGGGTCACCCGGTCCCCCAGTGGCAACTCGCCACGGGCAAACACCAGCATGTCGCGCACCTGGTGTTCCAGTTCGTGCAGGCGCTCCTTCAAGGTCGCGGCGAAGCGCTGACGGGTTTGCGCGCTCAG  >  3:164428/1‑149                                                                                                                                                                                                                                                                                                              TTCGCCGCGACCTTGAAGGAGCGCCTGCACGAACTGGAACACCAGGTGCGCGACATGCTGGTGTTTGCCCGTGGCGAGTTGCCACTGGGGGACCGGGTGACCCCGAAAGCGCTGTTCCAGGCCCTGCAACAGGCGGCCCAGGCGCATGTGCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4962982‑4962828 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcagggCCTGGAACAGCGCTTTCGGGGTCACCCGGTCCCCCAGTGGCAACTCGCCACGGGCAAACACCAGCATGTCGCGCACCTGGTGTTCCAGTTCGTGCAGGCGCTCCTTCAAGGTCGCGGCGAAGCGCTGACGGGTTTGCGCGCTCAG  >  NC_002947/4962862‑4963006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.