| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5077190 | 68 (1.130) | 4 (0.070) | 4/246 | NT | 6.0% | coding (312/327 nt) | PP_4470 | Arc domain‑containing transcriptional regulator |
| ? | NC_002947 | = 5077271 | 62 (1.120) | intergenic (+66/+42) | PP_4470/mgtE | Arc domain‑containing transcriptional regulator/magnesium transporter | |||||
CAGGAAGGTGCGCTGGGTGACGAACTGAGCATGCGCCTGGACAGCCCTGAACTGTCCCTGCATGAGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5077038‑5077190‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaatggccTTGCTGCCAGTCAGACGCCCACAAAAAAGCCAGCTTACGCTGGCTTTTTCGTGTTCGCTGCAGCCCTCAGGAGGCGTCTGCGGCCATTTCCACATCGTGAGCGATGAGGGCGACCAAGGCGTTCTGCTGGCGGTGGGACAGTTGGCG < NC_002947/5077271‑5077125 CAGGAAGGTGCGCTGGGTGACGAACTGAGCATGCGCCTGGACAGCCGTGAACTGTCCCTGCATGAGCGCGAGTTGCTGCAGCGTTTCCGACAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAAT > 8:104760/1‑149CAGGAAGGTGCGCTGGGTGACGAACTGAGCATGCGCCTGGACAGCCCTGAACTGTCCCTGCATGAGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAAT > 2:131248/1‑149 AGGAAGGTGCGCTGGGTGACGAACTGAGCATGCGCCTGGACAGCCCTGAACTGTCCCTGCATGAGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATG > 6:337394/1‑149 CCCTGAACTGTCCCTGCATGAGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCTTGCTGCCAGTCAGACGCCCACAAAAAAGCCAGCTTACGC > 4:45072/1‑149 TCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCTTGCTGCCAGTCAGACGCCCACAAAAAAGCCAGCTTACGCTGGCTTTTTCGTGTTCGCTGCAGCCCTCAGGAGGCGTCTGCGGCCATTTC < 3:3090/147‑1 CCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCTTGCTGCCAGTCAGACGCCCACAAAAAAGCCAGCTTACGCTGGCTTTTTCGTGTTCGCTGCAGCCCTCAGGAGGCGTCTGCGGCCATTTCCA < 7:104760/148‑1 CCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCTTGCTGCCAGTCAGACGCCCACAAAAAAGCCAGCTTACGCTGGCTTTTTCGTGTTCGCTGCAGCCCTCAGGAGGCGTCTGCGGCCATTTCCACATCGTGA < 3:45072/149‑1 GGAAATGGCCTTGCTGCCAGTCAGACGCCCACAAAAAAGCCAGCTTACGCTGGCTTTTTCGTGTTCGCTGCAGCCCTCAGGAGGCGTCTGCGGCCATTTCCACATCGTGAGCGATGAGGGCGACCAAGGCGTTCTGCTGGCGGTGGGAC < 3:23319/149‑1 GAAATGGCCTTGCTGCCAGTCAGACGCCCACAAAAAAGCCAGCTTACGCTGGCTTTTTCGTGTTCGCTGCAGCCCTCAGGAGGCGTCTGCGGCCATTTCCACATCGTGAGCGATGAGGGCGACCAAGGCGTTCTGCTGGCGGTGGGA > 4:290000/1‑147 GCCTTGCTGCCAGTCAGACGCCCACAAAAAAGCCAGCTTACGCTGGCTTTTTCGTGTTCGCTGCAGCCCTCAGGAGGCGTCTGCGGCCATTTCCACATCGTGAGCGATGAGGGCGACCAAGGCGTTCTGCTGGCGGTGGGACAGTTGGC < 4:217895/149‑1 GCCTTGCTGCCAGTCAGACGCCCACAAAAAAGCCAGCTTACGCTGGCTTTTTCGTGTTCGCTGCAGCCCTCAGGAGGCGTCTGCGGCCATTTCCACATCGTGAGCGATGAGGGCGACCAAGGCGTTCTGCTGGCGGTGGGACAGTTGGC > 6:297956/1‑149 GCCTTGCTGCCAGTCAGACGCCCACAAAAAAGCCAGCTTACGCTGGCTTTTTCGTGTTCGCTGCAGCCCTCAGGAGGCGTCTGCGGCCATTTCCACATCGTGAGCGATGAGGGCGACCAAGGCGTTCTGCTGGCGGTGGGACAGTTGGC < 8:127117/149‑1 CCTTGCTGCCAGTCAGACGCCCACAAAAAAGCCAGCTTACGCTGGCTTTTTCGTGTTCGCTGCAGCCCTCAGGAGGCGTCTGCGGCCATTTCCACATCGTGAGCGATGAGGGCGACCAAGGCGTTCTGCTGGCGGTGGGACAGTTGGCG < 1:94727/149‑1 CTTGCTGCCAGTCAGACGCCCACAAAAAAGCCAGCTTACGCTGGCTTTTTCGTGTTCGCTGCAGCCCTCAGGAGGCGTCTGCGGCCATTTCCACATCGTGAGCGATGAGGGCGACCAAGGCGTTCTGCTGGCGGTGGGACAGTTGGCG > 1:287313/1‑148 CAGGAAGGTGCGCTGGGTGACGAACTGAGCATGCGCCTGGACAGCCCTGAACTGTCCCTGCATGAGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5077038‑5077190‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaatggccTTGCTGCCAGTCAGACGCCCACAAAAAAGCCAGCTTACGCTGGCTTTTTCGTGTTCGCTGCAGCCCTCAGGAGGCGTCTGCGGCCATTTCCACATCGTGAGCGATGAGGGCGACCAAGGCGTTCTGCTGGCGGTGGGACAGTTGGCG < NC_002947/5077271‑5077125 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |