| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5108552 = | 72 (1.200) | 5 (0.090) | 5/258 | NT | 6.9% | coding (289/885 nt) | PP_4494 | LysR family transcriptional regulator |
| ? | NC_002947 | 5108578 = | 65 (1.110) | coding (315/885 nt) | PP_4494 | LysR family transcriptional regulator | |||||
GAAGGTTGGCAGGGTGGCCAGGCGCAACGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5108584‑5108552‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccAACCTTCGGTTCGAAATGGCTGTTGCCGAGGCTGCATGCGTTCTACAGCGCTCACCCGGGCATGCTGGTGCACATTCATTCACGCATTGAAACCATCAACTTCGACACCAGCGAAATCGATGCCGCCATCGGCGTGGCCAGCCAC > NC_002947/5108578‑5108722 GAAGGTTGGCAGGGTGGCCAGGCGCAACGTGCCAACCTTCGGTTCGAAATGGCTGTTGCCGAGGCTGCATGCGTTCTACAGCGCTCACCCGGGCATGCTGGTGCACATTCATTCACGCATTGAAACCATCAACTTCGAC > 3:185423/1‑139GAAGGTTGGCAGGGTGGCCAGGCGCAACGTGCCAACCTTCGGTTCGAAATGGCTGTTGCCGAGGCTGCATGCGTTCTACAGCGCTCACCCGGGCATGCTGGTGCACATTCATTCACGCATTGAAACCATCAACTTCGAC < 4:185423/139‑1 AAGGTTGGCAGGGTGGCCAGGCGCAACGTGCCAACCTTCGGTTCGAAATGGCTGTTGCCGAGGCTGCATGCGTTCTACAGCGCTCACCCGGGCATGCTGGT < 7:4142/101‑1 AAGGTTGGCAGGGTGGCCAGGCGCAACGTGCCAACCTTCGGTTCGAAATGGCTGTTGCCGAGGCTGCATGCGTTCTACAGCGCTCACCCGGGCATGCTGGT > 8:4142/1‑101 TTGGCAGGGTGGCCAGGCGCAACGTGCCAACCTTCGGTTCGAAATGGCTGTTGCCGAGGCTGCATGCGTTATACAGCGCTCACCCGGGCATGCTGGTGCACATTCATTCACGCATTGAAACCATCAACTTCGACACCAGCGAAATCGAT > 7:279458/1‑149 GCCAACCTTCGGTTCGAAATGGCTGTTGCCGAGGCTGCATGAGTTCTACAGCGCTCACCCGGGCATGATGGTGCACATTCATTCACGCATTGAAACCATCAACTACGACACCAGCGAAATCGATGCCGCCATCGGCGTGGCCAGCCAC > 5:285176/1‑148 GAAGGTTGGCAGGGTGGCCAGGCGCAACGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5108584‑5108552‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccAACCTTCGGTTCGAAATGGCTGTTGCCGAGGCTGCATGCGTTCTACAGCGCTCACCCGGGCATGCTGGTGCACATTCATTCACGCATTGAAACCATCAACTTCGACACCAGCGAAATCGATGCCGCCATCGGCGTGGCCAGCCAC > NC_002947/5108578‑5108722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |