| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5117270 = | 77 (1.280) | 4 (0.070) | 4/256 | NT | 5.2% | coding (359/678 nt) | PP_4503 | two‑component system response regulator |
| ? | NC_002947 | 5117340 = | 73 (1.260) | coding (429/678 nt) | PP_4503 | two‑component system response regulator | |||||
GCGGCTCGCCGGGCTGGCGCAGCAGCGCTTCAAGAATACGGCTTTCGGACAGGGTCAGGGTCATTTCGCGGCCATCGATGCTGGCCACGCCCCGCGCAGGGCTGTAGACCAGGTCACCCAGTTCCATCTGGCTGGTCGTGGCGGTGGGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5117422‑5117270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcCAGCATCGATGGCCGCGAAATGACCCTGACCCTGTCCGAAAGCCGTATTCTTGAAGCGCTGCTGCGCCAGCCCGGCGAGCCGCTGGACAAACAGGAACTGGCGC > NC_002947/5117340‑5117443 GCGGCTCGCCGGGCTGGCGCAGCAGCGCTTCAAGAATACGGCTTTCGGACAGGGTCAGGGTCATTTCGCGGCCATCGATGCTGGCCACGCCCCGCGCAGGGCTGTAGACCAGGTCACCCAGTTCCATCTGGCTGGTCGTGGCGGTGGGG > 4:248116/1‑149 GCTCGCCGGGCTGGCGCAGCAGCGCTTCAAGAATACGGCTTTCGGACAGGGTCAGGGTCATTTCGCGGCCATCGATGCTGGCCACGCCCCGCGCAGGGCTGTAGACCAGGTCACCCAGTTCCATCTGGCTGGTCGTGGCGGTGGGGTGG < 7:320041/149‑1 ATGCTGGCCACGCCCCGCGCAGGGCTGTAGACCAGGTCACCCAGTTCCATCTGGCTGGTCGTGGCGGTGGGGTGGCCAGCATCGATGGCCGCGAAATGACCCTGACCCTGTCCGAAAGCCGTATTCTTGAAGCGCTGCTGCGCCAGCCC > 4:245668/1‑149 TGGCCACGCCCCGCGCAGGGCTGTAGACCAGGTCACCCAGTTCCATCTGGCTGGTCGTGGCGGTGGGGTGGCCAGCATCGATGGCCGCGAAATGACCCTGACCCTGTCCGAAAGCCGTATTCTTGAAGCGCTGCTGCGCCAGCCCGGC > 6:239732/1‑148 GCCACGCCCCGCGCAGGGCTGTAGACCAGGTCACCCAGTTCCATCTGGCTGGTCGTGGCGGTGGGGTGGCCAGCATCGATGGCCGCGAAATGACCCTGACCCTGTCCGAAAGCCGTATTCTTGAAGCGCTGCTGCGCCAGCCCGGCGA < 3:245668/148‑1 CCAGGTCACCCAGTTCCATCTGGCTGGTCGTGGCGGTGGGGTGGCCAGCATCGATGGCCGCGAAATGACCCTGACCCTGTCCGAAAGCCGTATTCTTGAAGCGCTGCTGCGCCAGCCCGGCGAGCCGCTGGACAAACAGGAACTGGCGC < 5:239732/149‑1 GCGGCTCGCCGGGCTGGCGCAGCAGCGCTTCAAGAATACGGCTTTCGGACAGGGTCAGGGTCATTTCGCGGCCATCGATGCTGGCCACGCCCCGCGCAGGGCTGTAGACCAGGTCACCCAGTTCCATCTGGCTGGTCGTGGCGGTGGGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5117422‑5117270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcCAGCATCGATGGCCGCGAAATGACCCTGACCCTGTCCGAAAGCCGTATTCTTGAAGCGCTGCTGCGCCAGCCCGGCGAGCCGCTGGACAAACAGGAACTGGCGC > NC_002947/5117340‑5117443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |