New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5259635	54 (0.900)	7 (0.120)	7/256	NT	11.5%	coding (177/1179 nt)	yqeF	acetyl‑CoA acetyltransferase
	?	NC_002947	= 5259661	56 (0.970)					coding (203/1179 nt)	yqeF	acetyl‑CoA acetyltransferase

CCCGTACCGCCATCGGCAGCTTCCAGGGCGCCTTGGCCACAGTGCCTGCGGTTGACCTCGGCGCCGCCGTGATCAAGCAACTGCTGAAACAAACCGGGCTGGACCCGGCGCAGGTCGACGAAGTCATCCTCGGCCAAGTGCTCACTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5259487‑5259635 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccTGGCGTGCCGGGTTCTGACCGGCACCGGCAGTGAGCACTTGGCCGAGGATGACTTCGTCGACCTGCGCCGGGTCCAGCCCGGTTTGTTTCAGCAGTTGCTTGATCACGGCGGCGCCGAGGTCAACCGCAGGCACTGTGGCCAAGG  <  NC_002947/5259661‑5259517                                                                                                                                                                                                                                                                                                        CCCGTACCGCCATCGGCAGCTTCCAGGGCGCCTTGGCCACAGTGCCTGCGGTTGACCTCGGCGCCGCCGTGATCAAGCAACTGCTGAAACAAACCGGGCTGGACCCGGCGCAGGTCGACGAAGTCATCCTCGGCCAAGTGCTCACTGCC                                                                                                                                                   <  8:153624/149‑1         GCCATCGGCAGCTTCCAGGGCGCCTTGGCCACAGTGCCTGCGGTTGACCTCGGCGCCGCCGTGATCAAGCAACTGCTGAAACAAACCGGGCTGGACCCGGCGCAGGTCGACGAAGTCATCCTCGGCCAAGTGCTCACTGCCTGGCGTGC                                                                                                                                           >  5:273305/1‑149                        CAGGGCGACTTGGCCAGAGTGCCTGCGGTTGACCTCTGCGCCGCCGGGATCAAGCAACTGCTGAAACAACCCGGGCTGGACCCGGCGCAGGTCGACGAAGTCATCCTCGGCCAAGTGCTCACTGCC‑‑G‑GTGCCGGGTTCTGACCGGCAC                                                                                                                          <  1:126414/148‑1                                   GGCCACAGTGCCTGCGGTTGACCTCGGCGCCGCCGTGATCAAGCAACTGCTGAAACAAACCGGGCTGGACCCGGCGCAGGTCGACGAAGTCATCCTCGGCCAAGTGCTCACTGCCTGGCGTGCCGGGTTCTGACCGGCACCGGCAGT                                                                                                                   <  6:380976/147‑1                                    GCCACAGTGCCTGCGGTTGACCTCGGCGCCGCCGTGATCAAGCAACTGCTGAAACAAACCGGGCTGGACCCGGCGCAGGTCGACGAAGTCATCCTCGGCCAAGTGCTCACTGCCTGGCGTGCCGGGTTCTGACCGGCACCGGCAGTGAG                                                                                                                <  6:273305/149‑1                                                                                    CTGAAACAAACCGGGCTGGACCCGGCGCAGGTCGACGAAGTCATCCTCGGCCAAGTGCTCACTGCCTGGCGTGCCGGGTTCTGACCGGCACCGG                                                                                                                       >  7:296533/1‑94                                                                                    CTGAAACAAACCGGGCTGGACCCGGCGCAGGTCGACGAAGTCATCCTCGGCCAAGTGCTCACTGCCTGGCGTGCCGGGTTCTGACCGGCACCGG                                                                                                                       <  8:296533/94‑1                                                                                               CGGGCTGGACCCGGCGCAGGTCGACGAAGTCATCCTCGGCCAATTGCTCGCTGCCTGGCGTTGCGGGGTCTGACCGGCACCGGCAGGGAGCCCTTGGCCGCGGATGA                                                                                               >  7:125995/1‑107                                                                                                                                                    CCTGGCGTGCCGGGTTCTGACCGGCACCGGCAGTGAGTACTTGGCCGAGGATGACTTCGTCGACCTGCGCCGGGTCCAGCCCGGTTTGTTTCAGCAGTTGCTTGATCACGGCGGCGCCGAGGTCAACCGCAGGCACTGTGGCCAAGG  <  3:331865/147‑1                                                                                                                                                                                                                                                                                                        CCCGTACCGCCATCGGCAGCTTCCAGGGCGCCTTGGCCACAGTGCCTGCGGTTGACCTCGGCGCCGCCGTGATCAAGCAACTGCTGAAACAAACCGGGCTGGACCCGGCGCAGGTCGACGAAGTCATCCTCGGCCAAGTGCTCACTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5259487‑5259635 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccTGGCGTGCCGGGTTCTGACCGGCACCGGCAGTGAGCACTTGGCCGAGGATGACTTCGTCGACCTGCGCCGGGTCCAGCCCGGTTTGTTTCAGCAGTTGCTTGATCACGGCGGCGCCGAGGTCAACCGCAGGCACTGTGGCCAAGG  <  NC_002947/5259661‑5259517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.