New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5315015	46 (0.760)	3 (0.050)	3/242	NT	5.7%	intergenic (‑2/+66)	msrP/PP_4677	methionine sulfoxide reductase catalytic subunit/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
	?	NC_002947	= 5315042	58 (1.060)					intergenic (‑29/+39)	msrP/PP_4677	methionine sulfoxide reductase catalytic subunit/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase

CGCGCCCACCCCGCCCGGCAATGCGCCTAGCGCCAAGCCAGCCAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5314861‑5315015 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggctccatagTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCGTTCATGCTTATCAAGCTTCCCAGGTCTTCCGAGTGCAAGGCGTCGGAGATC‑ACCCCCGAAGGCATTTACCTTTCCCGTCGTACCCTGCTGGGTGGCTCATTGG  <  NC_002947/5315042‑5314902                                                                                                                                                                                                                                                                                                           CGCGCCCACCCCGCCCGGCAATGCGCCTAGCGCCAAGCCAGCCAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCT                                                                                                                                                      >  5:290330/1‑149     ccaACCCCGCCCGGCAATGCGCCTAGCGCCAAGCCAGCCAAAGAGCCACCCAGCAGGGTACGACCGGAAAGGTAAATGCCATCGGGGCTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCA                                                                                                                                                   >  2:266162/4‑148      CCACCCCGCCCGGCAATGCGCCTAGCGCCAAGCCAGCCAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCA                                                                                                                                                   >  8:218547/1‑147      CCACCCCGCCCGGCAATGCGCCTAGCGCCAAGCCAGCCAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCA                                                                                                                                                   >  8:48454/1‑147         CCCCGCCCGGCAATGCGCCTAGCGCCAAGCCAGCCAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAGTC                                                                                                                                              >  3:150132/1‑149                                           CAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAGTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGC                                                                                                            <  7:48454/149‑1                                            AATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAGTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCC                                                                                                           <  7:328163/149‑1                                                 GCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAGTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCGTTCA                                                                                                      <  4:150132/149‑1                                                                                                                                                  GGCTCCATAGTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCGTTCATGCTTATCAAGCTTCCCAGGTCTTCCGAGTGCAAGGCGTCGGAGATC‑ACCCCCGAAGGCATTTACCTTTCCCGTCGTACCCTGCTGGGTGGCTCATT    >  1:85339/1‑149                                                                                                                                                   GCTCCATAGTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCGTTCATGCTTATCAAGCTTCCCAGGTCTTCCGAGTGCAAGGCGTCGGAGATCAACCCCCGAAGGCATTTACCTTTCCCGTCGTACCCTGCTGGGTGGCTCATT    <  1:275691/149‑1                                                                                                                                                    CTCCATAGTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCGTTCATGCTTATCAAGCTTCCCAGGTCTTCCGAGTGCAAGGCGTCGGAGATC‑ACCCCCGAAGGCATTTACCTTTCCCGTCGTACCCTGCTGGGTGGCTCATTGG  <  4:68670/149‑1                                                                                                                                                                                                                                                                                                           CGCGCCCACCCCGCCCGGCAATGCGCCTAGCGCCAAGCCAGCCAATGAGCCACCCAGCAGGGTACGACGGGAAAGGTAAATGCCTTCGGGGGTGATCTCCGACGCCTTGCACTCGGAAGACCTGGGAAGCTTGATAAGCATGAACGGCTCCATAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5314861‑5315015 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggctccatagTCTTACTGGTACATCCGTTACTCAGTGCTATGGAGCCGTTCATGCTTATCAAGCTTCCCAGGTCTTCCGAGTGCAAGGCGTCGGAGATC‑ACCCCCGAAGGCATTTACCTTTCCCGTCGTACCCTGCTGGGTGGCTCATTGG  <  NC_002947/5315042‑5314902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.