| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5518889 = | 51 (0.850) | 3 (0.050) | 3/252 | NT | 5.6% | coding (22/321 nt) | PP_4851 | phosphate starvation‑inducible protein PsiF |
| ? | NC_002947 | 5518936 = | 52 (0.910) | intergenic (‑26/+5) | PP_4851/PP_4852 | phosphate starvation‑inducible protein PsiF/AraC family transcriptional regulator | |||||
CCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGCTACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5519040‑5518889‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccaagAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCT > NC_002947/5518936‑5519082 CCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGCTACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGC > 5:228883/1‑148CCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGCAACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGC > 8:128280/1‑148 CTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGCTACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGCC > 8:100823/1‑148 GGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGCTACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGCCAAG < 7:282456/148‑1 GGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGCTACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGCCAA < 4:189848/147‑1 GCTGAACATTCTTGGCTACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGCCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCT > 5:77818/1‑149 TTCTTGGCTACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGCCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGCTGTAGC > 5:241539/1‑149 GCTACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGCCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGT > 6:6494/1‑149 GCCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAG < 5:6494/149‑1 GCCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCA < 7:140729/148‑1 CCAAGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGC < 8:282456/149‑1 AGAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCT < 8:30034/149‑1 CCTTGGCTACAGCAGCGCTTCGGCGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGCTACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5519040‑5518889‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccaagAATGTTCAGCGCCCCGTCCGCGCCTGCCGGCGGTACTGCTCGGGCGTACACCGGGCCTGGCGCTGGAACATGGCGATGAACGCCGAAGCGCTGCTGTAGCCAAGGTCGAAGGCAATGGCCTGAATCGGCAGGCCGGCTTCCAGCGCT > NC_002947/5518936‑5519082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |