New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5637262 | 74 (1.230) | 4 (0.070) | 4/258 | NT | 5.4% | coding (1630/1803 nt) | PP_4948 | acyl‑CoA dehydrogenase family protein |
? | NC_002947 | = 5637286 | 68 (1.170) | coding (1654/1803 nt) | PP_4948 | acyl‑CoA dehydrogenase family protein |
GCAACTGGCCAACCGCCTGCAAGGCGTAACCCTGGCCCTGCTCGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5637111‑5637262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcCCTTGAGCATGCCAAGCTCGGCGTGAACCGCCTGTTCCAGCCAGCGCCAGCCGATCACGCAGTGGCCGAAGGCCTTGAGGTACAAGGCAGAGTTGGCCAGGGCACCAGCGACTTTGCCTTGGGCCAGGTCGCCGAGCAGGGCCAGGGT < NC_002947/5637286‑5637139 GCAACTGGCCAACCGCCTGCAAGGCGTAACCCTGGCCCTGCTCGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGACCTGGCCAACTCTGCCTTGTACCTCAAGGACTTCTGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGCCGG > 2:140812/1‑149 CTGCAAGGCGTAACCCTGGCCCTGCTCGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTT > 1:51649/1‑135 CTGCAAGGCGTAACCCTCGCCCTGCTCGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTT < 2:51649/135‑1 TAACCCTGGCCCTGCTCGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCCCTTGAGCATGCCAAGCTCGGCG > 4:300248/1‑149 CCCTGCTCGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCCCTTGAGCATGCCAAGCTCGGCGTGAACCGCC < 3:300248/149‑1 CGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCCCTTGAGCATGCCAAGCTCGGCGTGAACCGC > 7:272647/1‑141 CGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCCCTTGAGCATGCCAAGCTCGGCGTGAACCGC < 8:272647/141‑1 TTCCCTTGAGCATGCCAAGCTCGGCGTGAACCGCCTGTTCCAGCCAGCGCCAGCCGATCACGCAGTGGCCGAAGGCCTTGAGGTACAAGGCAGAGTTGGCCAGGGCACCAGCGACTTTGCCTTGGGCCAGGTCGCCGAGCAGGACCAGG > 6:107499/1‑149 TTCCCTTGAGCATGCCAAGCTCGGCGTGAACCGCCTGTTCCAGCCAGCGCCAGCCGATCACGCAGTGGCCGAAGGCCTTCAGGTACAAGGCAGAGTTGGCCAGGGCACCAGCGACTTTGCCTTGGGCCAGGTCGCCGAGCAGGGCCAGG < 3:35401/149‑1 CCCTTGAGCATGCCAAGCTCAGCGTGAACCGCCTGTTCCAGCCAGCGCCAGCCGATCACGCAGTGGCCGAAGGCCTTGAGGTACAAGGCAGAGTTGGCCAGGGCACCAGCGACTTTGCCTTGGGCCAGGTCGCCGAGCAGGGCCAGGGT > 4:38334/1‑149 GCAACTGGCCAACCGCCTGCAAGGCGTAACCCTGGCCCTGCTCGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5637111‑5637262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcCCTTGAGCATGCCAAGCTCGGCGTGAACCGCCTGTTCCAGCCAGCGCCAGCCGATCACGCAGTGGCCGAAGGCCTTGAGGTACAAGGCAGAGTTGGCCAGGGCACCAGCGACTTTGCCTTGGGCCAGGTCGCCGAGCAGGGCCAGGGT < NC_002947/5637286‑5637139 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |