New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5774063	58 (0.960)	4 (0.070)	4/254	NT	6.6%	coding (626/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	= 5774094	58 (1.010)					coding (657/657 nt)	betI	choline‑responsive transcriptional repressor BetI

CCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5773914‑5774063 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCC  <  NC_002947/5774094‑5773950                                                                                                                                                                                                                                                                                                         CCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGC                                                                                                                                                    <  3:368264/149‑1                                         GATGCCTTCGACCCCGCCCAGGCGATACGGATTCCTTACGAAAACATGGAACTACAACTGCCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATT                                                                                                            <  4:354255/149‑1                                          ATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTG                                                                                                           <  6:236345/149‑1                                            GCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGC                                                                                                                 >  3:327234/1‑141                                            GCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGC                                                                                                                 <  4:327234/141‑1                                                                                                                                                   CGCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACC   <  5:379367/148‑1                                                                                                                                                    GCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCC  >  1:123908/1‑148                                                                                                                                                    GCGTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCC  >  3:47930/1‑148                                                                                                                                                                                                                                                                                                         CCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACATGGAACTACAACTGGCCAAGCAGCACACCCTGGGCACAAACGACCAGGCTGCTGACAATGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5773914‑5774063 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgTCATGCTCCTGCCGGGTTGGCAAGGGCCCTGCGCGCATTGTCAGCAGCCTGGTCGTTTGTGCCCAGGGTGTGCTGCTTGGCCAGTTGTAGTTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCC  <  NC_002947/5774094‑5773950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.