New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5780703 =	51 (0.850)	3 (0.050)	3/256	NT	5.3%	coding (1007/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
	?	NC_002947	5780737 =	58 (1.000)					coding (1041/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP

TGAAGAACGCCAGGTTGAAGAACAGCTGGGCGTCTGGCAGGCCCGCCATCAGCGGGAACACCGCCAGAATGATCGGTACCGCGCCGCGCAGGCCGACCCACGAAATGAAGCCCTTTTCACGGCCGTGGAAAGCCTTGAAAGGCAGCAGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5780855‑5780703 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgTGAAAAGGGCTTCATTTCGTGGGTCGGCCTGCGCGGCGCGGTACCGATCATTCTGGCGGTGTTCCCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGGG  >  NC_002947/5780737‑5780883                                                                                                                                                                                                                                                                                                              TGAAGAACGCCAGGTTGAAGAACAGCTGGGCGTCTGGCAGGCCCGCCATCAGCGGGAACACCGCCAGAATGATCGGTACCGCGCCGCGCAGGCCGACCCACGAAATGAAGCCCTTTTCACGGCCGTGGAAAGCCTTGAAAGGCAGCAGG                                                                                                                                                         <  4:323718/149‑1   AAGAACGCCAGGTTGAAGAACAGCTGGGCGTCTGGCAGGCCCGCCATCAGCGGGAACACCGCCAGAATGATCGGTACCGCGCCGCGCAGGCCGACCCACGAAATGAAGCCCTTTTCACGGCCGTGGAAAGCCTTGAAAGGCAGCAGGG                                                                                                                                                        <  6:140414/148‑1     GAACGCCAGGTTGAAGAACAGCTGGGCGTCTGGCAGGCCCGCCATCAGCGGGAACACCGCCAGAATGATCGGTACCGCGCCGCGCAGGCCGACCCACGAAATGAAGCCCTTTTCACGGCCGTGGAAAGCCTTGAAAGGCAGCAGGGCCG                                                                                                                                                     >  3:323265/1‑149                                                                                                                 CTTTTCACGGCCGTGGAAAGCCTTGAAAGGCAGCAGGGCCGTGAAAAGGGCTTCATTTCGTGGGTCGGCCTGCGCGGCGCGGTACCGATCATTCTGGCGGTGTTCCCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCT                                         >  2:1309/1‑149                                                                                                                       ACGGCCGTGGAAAGCCTTGAAAGGCAGCAGGGCCGTGAAAAGGGCTTCATTTCGTGGGTCGGCCTGCGCGGCGCGGTACCGATCATTCTGG                                                                                             <  5:154311/91‑1                                                                                                                       ACGGCCGTGGAAAGCCTTGAAAGGCAGCAGGGCCGTGAAAAGGGCTTCATTTCGTGGGTCGGCCTGCGCGGCGCGGTACCGATCATTCTGG                                                                                             >  6:154311/1‑91                                                                                                                                                      GCCGTGAAAAGGGCTTCATTTCGTGGGTCGGCCTGCGCGGCGCGGTACCGATCATTCTGGCGGTGTTCCCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAG    <  3:239387/149‑1                                                                                                                                                      GCCGTGAAAAGGGCTTCATTTCGTGGGTCGGCCTGCGCGGCGCGGTACCGATCATTCTGGCGGTGTTCCCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAG    <  6:94379/149‑1                                                                                                                                                      GCCGTGAAAAGGGCTTCATTTCGTGGGTCGGCCTGCGCGGCGCGGTACCGATCATTCTGGCGGTGTTCCCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACT              <  1:76739/139‑1                                                                                                                                                      GCCGTGAAAAGGGCTTCATTTCGTGGGTCGGCCTGCGCGGCGCGGTACCGATCATTCTGGCGGTGTTCCCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACT              >  2:76739/1‑139                                                                                                                                                       CCGTGAAAAGGGCTTCATTTCGTGGGTCGGCCTGCGCGGCGCGGTACCGATCATTCTGGCGGTGTTCCCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGG   <  3:165312/149‑1                                                                                                                                                       CCGTGAAAAGGGCTTCATTTCGTGGGTCGGCCTGCGCGGCGCGGTACCGATCATTCTGGCGGTGTTCCCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTCCAGG   >  2:345925/1‑149                                                                                                                                                        CGTGAAAAGGGCTTCATTTCGTGGGTCGGCCTGCGCGGCGCGGTACCGATCATTCTGGCGGTGTTCCCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGGG  <  5:140414/149‑1                                                                                                                                                        CGTGAAAAGGGCTTCATTTCGTGGGTCGGCCTGCGCGGCGCGGTACCGATCATTCTGGCGGTGTTCCAGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGGG  >  1:245719/1‑149                                                                                                                                                                                                                                                                                                              TGAAGAACGCCAGGTTGAAGAACAGCTGGGCGTCTGGCAGGCCCGCCATCAGCGGGAACACCGCCAGAATGATCGGTACCGCGCCGCGCAGGCCGACCCACGAAATGAAGCCCTTTTCACGGCCGTGGAAAGCCTTGAAAGGCAGCAGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5780855‑5780703 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgTGAAAAGGGCTTCATTTCGTGGGTCGGCCTGCGCGGCGCGGTACCGATCATTCTGGCGGTGTTCCCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGGG  >  NC_002947/5780737‑5780883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.