New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 318796348 (0.800)3 (0.050) 3/256 NT 5.6% coding (1579/1659 nt) actP‑II acetate permease
?NC_002947 = 3188000 55 (0.950)coding (1616/1659 nt) actP‑II acetate permease

GTGGTGTTTTCCAAGCTGGTGTGGGTGGATGTGTTGCACTTTGCCGAACCGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAACCTCTGAAG  >  NC_002947/3187819‑3188109
                                                                                                                                                |                                                                                                                                                  
gtggtgTTTTCCAAGCTGGTGTGGGTGGATGTGTTGCACTTTGCCGAACCGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAgg                                                                                                                                                 <  3:29458/148‑1 (MQ=255)
 tggtgTTTTCCAAGCTGGTGTGGGTGGATGTGTTGCACTTTGCCGAACCGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCGAAGGcc                                                                                                                                               >  5:159362/1‑149 (MQ=255)
 tggtgTTTTCCAAGCTGGTGTGGGTGGATGTGTTGCACTTTGCCGAACCGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGcc                                                                                                                                               <  2:356141/149‑1 (MQ=255)
      ttttCCAAGCTGGTGTGGGTGGATGTGTTGCACTTTGCCGAACCGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAg                                                                                                                                          >  8:64919/1‑149 (MQ=255)
                  gtgtGGGTGGATGTGTTGCACTTTGCCGAACCGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGc                                                                                                                              >  4:144310/1‑149 (MQ=255)
                     ggggtggATGTGTTGCACTTTGCCGAACCGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGa                                                                                                                           >  4:195271/2‑149 (MQ=255)
                         tggATGTGTTGCACTTTGCCGAACCGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAg                                                                                                                       >  1:329707/1‑149 (MQ=255)
                           gATGTGTTGCACTTTGCCGAACCGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGtt                                                                                                                     <  2:329707/149‑1 (MQ=255)
                                    cACTTTGCCGTACCGCTGTTCCCCTATACCCTGCCTGCTCTGTTCTCCTTTCCGCTGGCGTTTTTTGTTGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCTGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGtgg                                                                                                            >  5:137614‑M2/1‑146 (MQ=255)
                                         tGCCGAACCGCTGTTCCCCTATCCCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCAGATGGACCGCACTGCGCGGGCCAcggacgaactggtcggcgaaggccgccctttcggccttggccc                                                                                                         <  1:245687‑M1/147‑44 (MQ=255)
                                           ccGAACCGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGAc                                                                                                      <  3:52354/148‑1 (MQ=255)
                                            cGAACCGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCg                                                                                                    >  8:219699/1‑149 (MQ=255)
                                             gAACCGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCATTCGCCGACCAGTTCGTCCGTGGCCAGACCgg                                                                                                   >  8:197071/1‑149 (MQ=255)
                                                 cGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCtt                                                                                               >  2:349483/1‑149 (MQ=255)
                                                      ttCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGt                                                                                            <  7:64919/147‑1 (MQ=255)
                                                        ccccTATACCCAGCCTGCGCTGTTCTCCATGCCGCAGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCATCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGc                                                                                          >  8:173067/1‑147 (MQ=255)
                                                          ccTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGc                                                                                      >  8:244517/1‑149 (MQ=255)
                                                           cTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCAGTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCg                                                                                     <  2:347299/149‑1 (MQ=255)
                                                           cTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGGGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCg                                                                                     <  1:358686/149‑1 (MQ=255)
                                                              taCCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGt                                                                                   <  5:133736/148‑1 (MQ=255)
                                                                 ccAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCg                                                                               >  2:122837/1‑149 (MQ=255)
                                                                   aGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTACCCGGATGGACCGAACTGCGCGGGCCAAGGCAGAAACCGCGGCCTTCGCCGACCAGTTCGACAGTGGCCAGACCGCCCTTGCTGCCAGCGGAGCCCTc                                                                             >  3:171852/1‑149 (MQ=255)
                                                                       tGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGAt                                                                          >  5:379927/1‑148 (MQ=255)
                                                                          gcTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCAtt                                                                      <  1:122837/149‑1 (MQ=255)
                                                                              ttCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGt                                                                  >  6:44274/1‑149 (MQ=255)
                                                                               tctcCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGt                                                                  >  7:227635/1‑148 (MQ=255)
                                                                                ctcCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAcggacgaactggtcggcgaaggccgccctttcggcc                                                                                                                >  6:195286‑M1/1‑65 (MQ=255)
                                                                                ctcCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAcggacgaactggtcggcgaaggccgccctttcggcc                                                                                                                <  5:195286‑M1/101‑37 (MQ=255)
                                                                                 tcCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTAc                                                               >  6:166717/1‑149 (MQ=255)
                                                                                   cATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGc                                                                                                  <  7:158995/112‑1 (MQ=255)
                                                                                   cATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGc                                                                                                  >  8:158995/1‑112 (MQ=255)
                                                                                    aTGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCcg                                                            >  4:120084/1‑149 (MQ=255)
                                                                                          cTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGTCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTg                                                                                              <  7:195055/109‑1 (MQ=255)
                                                                                          cTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGTCCAAGGCAGAAAGGGCGGACTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTg                                                                                              >  8:195055/1‑109 (MQ=255)
                                                                                                   ttGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCa                                              <  7:173067/148‑1 (MQ=255)
                                                                                                    tggtggCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAg                                             <  5:166717/148‑1 (MQ=255)
                                                                                                           gTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCa                                     <  5:44274/149‑1 (MQ=255)
                                                                                                                 ggTTTCCCGGATGGACTGCACTGCGCGGGCCAAGGCCGTAAGGGCGGCCTTCGCAGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGcc                               <  4:171852/149‑1 (MQ=255)
                                                                                                                  gTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCg                              <  5:154094/149‑1 (MQ=255)
                                                                                                                     tCCCTGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCgtg                            <  1:349483/148‑1 (MQ=255)
                                                                                                                      cccGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCgtgt                           <  3:195271/148‑1 (MQ=255)
                                                                                                                       ccGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGa                         <  3:144310/149‑1 (MQ=255)
                                                                                                                       ccGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGa                         >  7:52879/1‑149 (MQ=255)
                                                                                                                               aCCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGc                 <  7:219699/149‑1 (MQ=255)
                                                                                                                                 cGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGc                 >  5:198485/1‑147 (MQ=255)
                                                                                                                                  gCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAg              <  6:198485/149‑1 (MQ=255)
                                                                                                                                  gCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAg              >  1:336923/1‑149 (MQ=255)
                                                                                                                                   cACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAg              >  1:104087/1‑148 (MQ=255)
                                                                                                                                   cACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAg              >  4:248910/1‑148 (MQ=255)
                                                                                                                                   cACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAg              >  4:253760/1‑148 (MQ=255)
                                                                                                                                    aCTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGt             >  7:8265/1‑148 (MQ=255)
                                                                                                                                      tGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTAGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAAc          >  6:12784/1‑149 (MQ=255)
                                                                                                                                        cgcgGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAACct        >  4:306337/1‑149 (MQ=255)
                                                                                                                                           gggCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGtggcccgcgcagtgcggtccatctgggaaaccgcatacgccaccaaaaacgccagcggcatggagaacagcgcaggctggggataggggaacagcggttcggca       <  1:245687‑M2/147‑105 (MQ=255)
                                                                                                                                           gggCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAgcg                                                >  2:262104/1‑106 (MQ=255)
                                                                                                                                           gggCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGCTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAgcg                                                <  1:262104/106‑1 (MQ=255)
                                                                                                                                              ccAcggacgaactggtcggcgaaggccgccctttcggccttggccagcgcagtgcggtccatccgggaaaccgcatacgcaacaaaaaacgccagcggaaaggagaacagagcaggcagggtataggggaacagcggtacggcaaagtg  >  5:137614‑M1/1‑3 (MQ=255)
                                                                                                                                              ccAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAACCTCTGAAg  <  7:197071/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                  
GTGGTGTTTTCCAAGCTGGTGTGGGTGGATGTGTTGCACTTTGCCGAACCGCTGTTCCCCTATACCCAGCCTGCGCTGTTCTCCATGCCGCTGGCGTTTTTGGTGGCGTATGCGGTTTCCCGGATGGACCGCACTGCGCGGGCCAAGGCCGAAAGGGCGGCCTTCGCCGACCAGTTCGTCCGTGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAACCTCTGAAG  >  NC_002947/3187819‑3188109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.