New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4583475 =	36 (0.600)	4 (0.080)	3/226	NT	15.8%	intergenic (‑48/+123)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	4583576 =	12 (0.240)					intergenic (‑149/+22)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

TTCGAGTCGAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCG  >  NC_002947/4583327‑4583618                                                                                                                                                     |                                                                                                                                                 ttCGAGTCGAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATc                                                                                                                                                  >  1:43654/1‑149 (MQ=255)   cGAGTCGAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATcc                                                                                                                                                 <  8:280187/148‑1 (MQ=255)      gTCGAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑g                                                                                                                                            >  5:335993/1‑149 (MQ=255)           agggtgaagacctgatgaacggccaccgctggtcgtggtacggcaagacccaatggatgcgcatagagccctggcacctgccgttcggcatctggcgcatcgaaaaagcccgttaacaaggttcagactgtgtcccccCCCCC‑GTAGGa                                                                                                                                       >  7:283152‑M1/139‑149 (MQ=255)             aaCGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGc                                                                                                                                     <  2:177869/149‑1 (MQ=255)              gtgaagacctgatgaacggccaccgctggtcgtggtacggcaagacccaatggatgcgcatagagccctggcacctgccgttcggcatctggcgcatcgaaaaagcccgttaacaaggttcagactgtgccccccCCCC‑‑GTAGGAGCgg                                                                                                                                   >  1:216399‑M1/136‑149 (MQ=255)               cGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCTGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCgg                                                                                                                                   <  5:212798/149‑1 (MQ=255)                      ctgatgaacggccaccgctggtcgtggtacggcaagacccaatggatgcgcatagagccctggcacctgccgttcggcatctggcgcatcgaaaaagcccgttaacaaggttcagactgtggccgccCCCCC‑GTgggggcggggttgcc                                                                                                                            <  5:199151‑M1/22‑7 (MQ=255)                      aTGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACCGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTAc                                                                                                                             <  6:158111/148‑1 (MQ=255)                      aTGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTAcc                                                                                                                            >  5:124919/1‑149 (MQ=255)                              cTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCcgcg                                                                                                                        >  3:99445/1‑145 (MQ=255)                              cTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGa                                                                                                                    <  5:281343/149‑1 (MQ=255)                                 gTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGa                                                                                                                 <  4:99445/149‑1 (MQ=255)                                   aGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGaca                                                                                                               >  5:159967/1‑149 (MQ=255)                                     aTGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACAcc                                                                                                             >  3:46340/1‑149 (MQ=255)                                      tGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCAGCGAAGATGACACcg                                                                                                            >  4:199342/1‑149 (MQ=255)                                        aCGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACcgcg                                                                                                          <  2:116553/149‑1 (MQ=255)                                           gCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTATCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTg                                                                                                       <  6:124919/149‑1 (MQ=255)                                             gTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGcc                                                                                                     <  4:46340/149‑1 (MQ=255)                                                cTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAg                                                                                                  <  2:75446/149‑1 (MQ=255)                                                   gTACCACAGCGGGTCGTCGATGAAGGCTGACGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTATCCGCGAAGATGACACCGCGGTGCCGAGGt                                                                                                <  1:218028/148‑1 (MQ=255)                                                    tACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTg                                                                                               >  7:345278/1‑148 (MQ=255)                                                       cacaGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATg                                                                                           >  4:370670/1‑149 (MQ=255)                                                             gggTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCg                                                                                     <  6:159967/149‑1 (MQ=255)                                                                     gATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGc                                                                              <  6:335993/148‑1 (MQ=255)                                                                     gATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGc                                                                              <  3:370670/148‑1 (MQ=255)                                                                     gATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGc                                                                              <  5:167106/148‑1 (MQ=255)                                                                            gCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTc                                                                      <  6:102692/149‑1 (MQ=255)                                                                                ccGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTcgcg                                                                   <  2:43654/148‑1 (MQ=255)                                                                                           ccgttcggcatctggcgcatcgaaaaaccccgttaacaaggttcacacggtgccccccCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGc                                                        >  6:199151‑M1/59‑148 (MQ=255)                                                                                           ccgtgcggcatctggcgcatctaaaaaccccgttaacaaggttcatactttgccccccCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCg                                                         >  6:326870‑M1/59‑147 (MQ=255)                                                                                             cTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACACGCTcc                                                     >  3:74282/1‑149 (MQ=255)                                                                                              ttccggatctggggcatcgaaaaaacccggtaacaagtgtccctcggggccccccCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCt                                                    >  6:326039‑M1/56‑149 (MQ=255)                                                                                                cggcatgtggcgcatcgaaaaagcccgttaaaaaggttcagtctgtgccccccCCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCt                                                    >  8:15825‑M1/54‑148 (MQ=255)                                                                                                 gCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACg                                                 >  8:48124/1‑149 (MQ=255)                                                                                                      gtgCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCTGGTGTTCGCGGATAAACCCGCTCCTACgggggg                                            >  3:267753/1‑149 (MQ=255)                                                                                                         cGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACggggggggg                                         >  3:25712/1‑149 (MQ=255)                                                                                                          gACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCAt                                                                                            >  4:170199/1‑97 (MQ=255)                                                                                                          gACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCAt                                                                                            <  3:170199/97‑1 (MQ=255)                                                                                                                tttCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAg                                  >  1:348662/1‑149 (MQ=255)                                                                                                                tttCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTAGCGGATAAACCAGCTCCTACGGGGGGGGGGGcgac                                   >  3:250781/1‑145 (MQ=255)                                                                                                                    aaTTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATgg                                                                                          <  8:62312/89‑1 (MQ=255)                                                                                                                    aaTTGCATGAACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATgg                                                                                          >  7:62312/1‑89 (MQ=255)                                                                                                                                       cGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGGCTGAACCTTGGTAACGGGCttt           >  6:81619/1‑149 (MQ=255)                                                                                                                                        gAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCCCACGGTGAACGGTTGTAAGGGGCtttt          >  4:102557/1‑149 (MQ=37)                                                                                                                                                tCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGGTTTTTGGATgcg  >  1:52832/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 TTCGAGTCGAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC‑GTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCG  >  NC_002947/4583327‑4583618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.